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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:995.2 nTPM
FANTOM5:1097.6 Scaled Tags Per Million
Pig:720.8 nTPM
Mouse:64.1 nTPM
Allen mouse:13.9 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

995.2
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 794.7
2032 Female, age 42, unknown 865.3
2497 Male, age 66, unknown 845.0
2396 Male, age 61, right hemisphere 673.7
Centromedial thalamic nucleus
nTPM: 909.5
2279 Female, age 85, left hemisphere 931.4
2401 Male, age 76, right hemisphere 887.5
Habenula
nTPM: 826.4
2203 Male, age 61, left hemisphere 942.6
1957 Male, age 80, both hemispheres 909.1
2276 Male, age 66, unknown 729.4
2252 Male, age 62, unknown 724.3
Lateral geniculate body
nTPM: 897.6
2575 Female, age 94, right hemisphere 1047.6
2841 Male, age 80, both hemispheres 967.0
1953 Male, age 62, unknown 904.1
2035 Female, age 72, unknown 904.0
2399 Male, age 61, left hemisphere 884.7
2106 Female, age 67, right hemisphere 878.9
2659 Male, age 66, unknown 825.3
2857 Male, age 74, right hemisphere 769.0
Lateral thalamic nuclei
nTPM: 889.1
2765 Female, age 67, both hemispheres 1120.4
2573 Female, age 94, left hemisphere 1006.2
1903 Male, age 76, left hemisphere 816.9
2577 Male, age 74, both hemispheres 770.9
2661 Female, age 72, unknown 731.0
Medial dorsal thalamic nucleus
nTPM: 867.7
2572 Female, age 94, right hemisphere 1097.4
2492 Male, age 75, right hemisphere 971.1
1971 Male, age 61, right hemisphere 964.3
2402 Female, age 67, both hemispheres 907.8
1859 Male, age 76, both hemispheres 901.5
2039 Female, age 72, unknown 861.0
2576 Male, age 74, both hemispheres 833.2
2283 Male, age 80, right hemisphere 816.6
1810 Male, age 48, unknown 806.2
2498 Male, age 66, unknown 802.2
2026 Male, age 62, unknown 783.7
2660 Female, age 72, unknown 777.9
1930 Female, age 42, unknown 757.4
Medial geniculate body
nTPM: 858.0
2571 Male, age 75, right hemisphere 1005.0
2650 Female, age 94, left hemisphere 937.1
2217 Female, age 72, unknown 875.5
2207 Male, age 80, right hemisphere 851.8
2657 Male, age 74, right hemisphere 828.8
2049 Male, age 76, both hemispheres 790.4
1811 Female, age 42, unknown 717.3
Nucleus reuniens
nTPM: 950.5
2210 Female, age 85, left hemisphere 973.8
2205 Male, age 80, left hemisphere 962.6
2212 Female, age 67, left hemisphere 915.1
Nucleus rhomboideus
nTPM: 943.1
2213 Female, age 67, left hemisphere 1097.9
2280 Female, age 85, left hemisphere 884.9
2206 Male, age 80, both hemispheres 846.5
Posterior thalamic nucleus
nTPM: 867.2
2649 Female, age 94, both hemispheres 1121.4
2266 Male, age 76, right hemisphere 817.9
2495 Female, age 67, right hemisphere 816.4
2655 Male, age 74, right hemisphere 713.2
Pulvinar
nTPM: 837.7
2398 Male, age 61, left hemisphere 950.7
1972 Male, age 62, unknown 943.9
2214 Male, age 76, right hemisphere 865.4
2499 Male, age 66, unknown 864.7
1932 Male, age 80, right hemisphere 845.2
1929 Male, age 48, unknown 840.0
1899 Female, age 42, unknown 802.2
2582 Female, age 72, unknown 784.6
2724 Male, age 74, right hemisphere 753.6
2496 Female, age 67, right hemisphere 726.8
Subthalamic nucleus
nTPM: 995.2
2124 Male, age 62, unknown 1224.9
2056 Female, age 72, unknown 1145.7
2282 Male, age 61, both hemispheres 1023.6
2216 Male, age 48, unknown 1015.5
2275 Male, age 66, unknown 964.1
2779 Female, age 42, unknown 958.4
2658 Male, age 74, both hemispheres 900.5
2406 Female, age 72, unknown 728.7
Ventral posterolateral thalamic nucleus
nTPM: 866.0
2570 Male, age 75, right hemisphere 1023.9
2740 Male, age 76, right hemisphere 962.6
2397 Male, age 61, right hemisphere 875.4
2197 Male, age 80, both hemispheres 873.3
2578 Male, age 74, both hemispheres 777.5
2581 Female, age 72, unknown 683.1
Ventral posteromedial thalamic nucleus
nTPM: 917.2
2281 Male, age 75, right hemisphere 1043.6
2127 Male, age 76, right hemisphere 1038.6
2202 Male, age 61, left hemisphere 909.7
2758 Male, age 80, both hemispheres 839.4
2653 Male, age 74, both hemispheres 754.6
Ventral thalamic nuclei
nTPM: 893.9
2291 Female, age 72, unknown 1032.1
2580 Male, age 66, unknown 941.3
1860 Male, age 76, both hemispheres 932.1
2652 Male, age 74, left hemisphere 922.6
1845 Male, age 48, unknown 919.0
2204 Male, age 80, both hemispheres 876.3
1912 Female, age 42, unknown 833.8
2285 Male, age 62, unknown 819.8
2858 Female, age 72, unknown 768.1
Zona incerta
nTPM: 890.5
2215 Male, age 66, unknown 1048.9
2822 Male, age 74, right hemisphere 909.3
2403 Male, age 62, unknown 874.2
2663 Female, age 72, unknown 838.0
2208 Male, age 80, right hemisphere 782.2

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1097.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 1097.6
FF:10154-103A1 76 years, female 1097.6

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

720.8
Pig sample Sample description nTPM
Thalamus
nTPM: 720.8
Samples: 4

Max nTPM: 888.1
Min nTPM: 621.5
Sample A Female 746.9
Sample B Female 626.6
Sample C Male 621.5
Sample D Male 888.1

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.1
Mouse sample Sample description nTPM
Thalamus
nTPM: 64.1
Samples: 4

Max nTPM: 69.6
Min nTPM: 55.6
Sample A Male 55.6
Sample B Male 66.2
Sample C Female 65.0
Sample D Female 69.6

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.9
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 13.9
74510104 Antisense, RP_060208_01_A08, Mouse strain C57BL/6J (56 days, male) 13.9

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