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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
259.6
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 106.2
2301
Female, age 85, both hemispheres
132.6
1984
Male, age 76, both hemispheres
123.9
2188
Female, age 91, both hemispheres
92.8
2090
Male, age 80, both hemispheres
75.3
Dorsal cochlear nucleus nTPM: 110.5
2370
Male, age 61, both hemispheres
128.9
2058
Male, age 76, both hemispheres
126.4
2802
Male, age 74, right hemisphere
109.2
2187
Female, age 91, both hemispheres
97.1
2378
Male, age 80, both hemispheres
90.7
Dorsal tegmental nucleus nTPM: 101.1
2083
Male, age 80, both hemispheres
127.4
2358
Male, age 61, both hemispheres
101.2
1936
Male, age 76, left hemisphere
99.9
2326
Male, age 74, both hemispheres
75.8
Dorsolateral tegmental area nTPM: 88.3
2141
Male, age 76, both hemispheres
124.8
2654
Male, age 80, both hemispheres
121.7
2751
Female, age 85, both hemispheres
85.6
2360
Male, age 74, both hemispheres
61.6
2337
Male, age 61, both hemispheres
48.0
Kolliker-Fuse nucleus nTPM: 131.5
2163
Male, age 80, both hemispheres
162.7
2793
Female, age 91, left hemisphere
159.2
2315
Male, age 76, right hemisphere
72.5
Lateral lemniscal nuclei nTPM: 229.3
2453
Male, age 74, right hemisphere
282.9
2169
Male, age 76, both hemispheres
257.6
2036
Male, age 80, both hemispheres
237.0
2746
Female, age 85, left hemisphere
189.1
2320
Female, age 91, left hemisphere
180.0
Lateral parabrachial nucleus nTPM: 136.4
2139
Female, age 85, right hemisphere
225.1
2790
Male, age 61, both hemispheres
156.4
2013
Male, age 80, both hemispheres
116.9
2792
Male, age 76, both hemispheres
47.0
Lateral vestibular nucleus nTPM: 135.4
2184
Male, age 76, both hemispheres
160.8
2311
Male, age 80, both hemispheres
110.1
Locus coeruleus nTPM: 126.9
2123
Female, age 91, both hemispheres
170.2
2720
Male, age 74, both hemispheres
139.0
2162
Male, age 80, both hemispheres
132.6
1980
Male, age 76, both hemispheres
118.7
2317
Female, age 72, unknown
118.5
2788
Male, age 74, unknown
107.8
2014
Male, age 55, unknown
101.4
Medial parabrachial nucleus nTPM: 123.7
2156
Male, age 61, both hemispheres
168.5
2854
Male, age 80, both hemispheres
148.8
2786
Male, age 76, both hemispheres
132.8
2463
Female, age 85, right hemisphere
84.8
2170
Female, age 91, both hemispheres
83.5
Medial periolivary nuclei nTPM: 198.4
2171
Female, age 85, both hemispheres
293.3
2063
Male, age 76, both hemispheres
235.8
2791
Male, age 74, right hemisphere
188.1
2458
Female, age 91, both hemispheres
161.9
2081
Male, age 80, both hemispheres
113.0
Motor facial nucleus nTPM: 215.5
2327
Male, age 80, both hemispheres
251.4
2062
Male, age 76, both hemispheres
249.5
2795
Female, age 91, both hemispheres
231.6
2365
Male, age 74, right hemisphere
223.6
2697
Female, age 85, both hemispheres
202.1
2126
Male, age 61, both hemispheres
134.8
Motor trigeminal nucleus nTPM: 168.9
2560
Male, age 74, both hemispheres
219.7
2079
Male, age 80, both hemispheres
197.0
2335
Male, age 61, both hemispheres
163.3
2309
Male, age 76, both hemispheres
139.5
2321
Female, age 91, both hemispheres
125.1
Nuclei of the trapezoid body nTPM: 242.3
2159
Male, age 61, both hemispheres
307.2
2735
Female, age 85, both hemispheres
286.9
1983
Male, age 76, both hemispheres
222.9
2368
Female, age 91, both hemispheres
220.6
2166
Male, age 80, both hemispheres
173.8
Nucleus raphe magnus nTPM: 259.6
2160
Male, age 61, both hemispheres
381.7
2172
Female, age 85, both hemispheres
329.8
2455
Male, age 74, both hemispheres
268.7
2328
Male, age 80, both hemispheres
217.7
2459
Female, age 91, both hemispheres
187.6
2051
Male, age 76, both hemispheres
172.1
Paramedian reticular nucleus nTPM: 143.3
2050
Female, age 85, both hemispheres
191.5
2313
Male, age 61, both hemispheres
165.6
2057
Male, age 80, both hemispheres
136.9
2052
Male, age 76, both hemispheres
79.3
Pedunculopontine tegmental nucleus nTPM: 113.8
2334
Male, age 80, both hemispheres
118.0
1921
Female, age 85, both hemispheres
117.4
2338
Male, age 61, both hemispheres
106.0
Pontine nuclei nTPM: 211.7
2787
Female, age 85, both hemispheres
352.4
2727
Male, age 61, right hemisphere
297.5
1863
Male, age 55, unknown
225.5
1968
Male, age 76, left hemisphere
224.3
2109
Female, age 72, unknown
185.5
2454
Male, age 74, left hemisphere
152.7
2115
Male, age 80, left hemisphere
147.3
2319
Female, age 91, both hemispheres
108.0
Pontine raphe nucleus nTPM: 152.8
2122
Female, age 85, midline
195.4
2853
Male, age 76, midline
110.2
Posteroventral cochlear nucleus nTPM: 96.2
2752
Female, age 85, both hemispheres
170.3
2070
Male, age 76, both hemispheres
122.1
2371
Male, age 61, both hemispheres
117.4
2341
Male, age 80, both hemispheres
52.8
2135
Female, age 91, both hemispheres
18.1
Principal sensory trigeminal nucleus nTPM: 205.9
2158
Male, age 61, both hemispheres
328.4
2008
Male, age 80, left hemisphere
209.7
2324
Male, age 76, both hemispheres
143.2
2367
Female, age 91, left hemisphere
142.3
Reticular pontine nucleus, caudal nTPM: 172.6
2332
Male, age 80, right hemisphere
270.5
2092
Male, age 76, both hemispheres
165.5
2457
Female, age 91, both hemispheres
160.0
2559
Male, age 74, both hemispheres
94.3
Reticular pontine nucleus, oral nTPM: 135.6
2361
Male, age 74, both hemispheres
189.2
2012
Female, age 85, both hemispheres
161.4
2366
Female, age 91, both hemispheres
129.2
2167
Male, age 76, both hemispheres
108.3
1939
Male, age 80, both hemispheres
89.9
Reticulotegmental nucleus nTPM: 152.9
2325
Male, age 76, both hemispheres
175.9
2452
Male, age 74, both hemispheres
159.7
2333
Male, age 80, both hemispheres
142.1
2322
Female, age 91, both hemispheres
133.9
Spinal trigeminal nucleus, oral nTPM: 144.1
2737
Female, age 85, both hemispheres
153.7
2164
Male, age 80, both hemispheres
148.9
1978
Male, age 76, both hemispheres
129.7
Subcoeruleus area nTPM: 144.8
2323
Female, age 91, left hemisphere
193.8
2089
Male, age 76, left hemisphere
179.3
1958
Male, age 80, both hemispheres
167.2
2451
Male, age 74, both hemispheres
121.9
2369
Female, age 85, left hemisphere
61.7
Superior olive nTPM: 194.9
1875
Female, age 85, both hemispheres
232.5
2561
Female, age 91, both hemispheres
213.3
2329
Male, age 80, right hemisphere
200.7
2364
Male, age 74, right hemisphere
168.2
2020
Male, age 76, both hemispheres
159.9
Ventral periolivary nuclei nTPM: 224.0
2130
Female, age 85, both hemispheres
277.6
2165
Male, age 80, both hemispheres
239.3
2794
Female, age 91, left hemisphere
233.5
2023
Male, age 76, both hemispheres
145.8
Ventrolateral tegmental area, A5 NE cell group nTPM: 173.2
2449
Male, age 74, both hemispheres
254.7
2840
Female, age 85, both hemispheres
180.3
2161
Male, age 80, both hemispheres
177.1
1959
Male, age 76, both hemispheres
175.2
2456
Female, age 91, both hemispheres
153.0
2359
Male, age 61, both hemispheres
99.3
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
133.1
Pig sample
Sample description
nTPM
Pons nTPM: 133.1
Samples: 4
Max nTPM: 167.4
Min nTPM: 110.2
Sample A
Female
167.4
Sample B
Female
110.2
Sample C
Male
110.7
Sample D
Male
144.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
