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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:206.8 nTPM
FANTOM5:166.3 Scaled Tags Per Million
Pig:374.7 nTPM
Mouse:246.4 nTPM
Allen mouse:19.5 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

206.8
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 154.0
2032 Female, age 42, unknown 190.0
2497 Male, age 66, unknown 168.5
2396 Male, age 61, right hemisphere 103.5
Centromedial thalamic nucleus
nTPM: 129.0
2401 Male, age 76, right hemisphere 175.8
2279 Female, age 85, left hemisphere 82.3
Habenula
nTPM: 168.5
2276 Male, age 66, unknown 191.1
2203 Male, age 61, left hemisphere 167.3
1957 Male, age 80, both hemispheres 167.1
2252 Male, age 62, unknown 148.4
Lateral geniculate body
nTPM: 186.0
2035 Female, age 72, unknown 236.8
2106 Female, age 67, right hemisphere 211.6
2399 Male, age 61, left hemisphere 195.3
2857 Male, age 74, right hemisphere 194.4
1953 Male, age 62, unknown 186.0
2575 Female, age 94, right hemisphere 161.1
2841 Male, age 80, both hemispheres 154.3
2659 Male, age 66, unknown 148.6
Lateral thalamic nuclei
nTPM: 167.7
2573 Female, age 94, left hemisphere 225.4
1903 Male, age 76, left hemisphere 159.7
2765 Female, age 67, both hemispheres 158.0
2577 Male, age 74, both hemispheres 148.2
2661 Female, age 72, unknown 147.2
Medial dorsal thalamic nucleus
nTPM: 179.5
2572 Female, age 94, right hemisphere 314.7
2498 Male, age 66, unknown 209.8
1810 Male, age 48, unknown 200.5
2492 Male, age 75, right hemisphere 197.6
2283 Male, age 80, right hemisphere 194.3
1859 Male, age 76, both hemispheres 189.4
1971 Male, age 61, right hemisphere 168.9
2576 Male, age 74, both hemispheres 168.4
1930 Female, age 42, unknown 149.1
2026 Male, age 62, unknown 148.4
2402 Female, age 67, both hemispheres 140.0
2660 Female, age 72, unknown 131.0
2039 Female, age 72, unknown 121.7
Medial geniculate body
nTPM: 171.7
2650 Female, age 94, left hemisphere 242.0
2571 Male, age 75, right hemisphere 178.6
1811 Female, age 42, unknown 176.5
2207 Male, age 80, right hemisphere 170.0
2217 Female, age 72, unknown 162.7
2657 Male, age 74, right hemisphere 159.8
2049 Male, age 76, both hemispheres 112.4
Nucleus reuniens
nTPM: 129.0
2205 Male, age 80, left hemisphere 143.7
2212 Female, age 67, left hemisphere 134.1
2210 Female, age 85, left hemisphere 109.1
Nucleus rhomboideus
nTPM: 138.6
2206 Male, age 80, both hemispheres 187.7
2280 Female, age 85, left hemisphere 123.3
2213 Female, age 67, left hemisphere 104.8
Posterior thalamic nucleus
nTPM: 206.8
2649 Female, age 94, both hemispheres 315.5
2655 Male, age 74, right hemisphere 181.5
2495 Female, age 67, right hemisphere 165.4
2266 Male, age 76, right hemisphere 164.7
Pulvinar
nTPM: 185.3
1972 Male, age 62, unknown 227.4
1932 Male, age 80, right hemisphere 226.2
1899 Female, age 42, unknown 203.6
2398 Male, age 61, left hemisphere 195.8
2499 Male, age 66, unknown 184.1
2496 Female, age 67, right hemisphere 176.8
1929 Male, age 48, unknown 174.5
2582 Female, age 72, unknown 162.2
2214 Male, age 76, right hemisphere 155.0
2724 Male, age 74, right hemisphere 147.4
Subthalamic nucleus
nTPM: 140.2
2658 Male, age 74, both hemispheres 167.6
2282 Male, age 61, both hemispheres 163.7
2124 Male, age 62, unknown 159.6
2779 Female, age 42, unknown 135.3
2056 Female, age 72, unknown 134.2
2275 Male, age 66, unknown 130.8
2406 Female, age 72, unknown 124.1
2216 Male, age 48, unknown 105.9
Ventral posterolateral thalamic nucleus
nTPM: 186.3
2740 Male, age 76, right hemisphere 269.6
2197 Male, age 80, both hemispheres 192.1
2570 Male, age 75, right hemisphere 181.3
2397 Male, age 61, right hemisphere 172.8
2578 Male, age 74, both hemispheres 151.5
2581 Female, age 72, unknown 150.5
Ventral posteromedial thalamic nucleus
nTPM: 169.4
2758 Male, age 80, both hemispheres 207.8
2281 Male, age 75, right hemisphere 200.2
2202 Male, age 61, left hemisphere 171.5
2653 Male, age 74, both hemispheres 141.8
2127 Male, age 76, right hemisphere 125.8
Ventral thalamic nuclei
nTPM: 166.2
1845 Male, age 48, unknown 196.9
2858 Female, age 72, unknown 194.9
1860 Male, age 76, both hemispheres 180.2
2285 Male, age 62, unknown 173.2
1912 Female, age 42, unknown 161.9
2204 Male, age 80, both hemispheres 158.3
2580 Male, age 66, unknown 154.1
2291 Female, age 72, unknown 150.3
2652 Male, age 74, left hemisphere 126.0
Zona incerta
nTPM: 108.4
2208 Male, age 80, right hemisphere 125.5
2822 Male, age 74, right hemisphere 124.7
2215 Male, age 66, unknown 112.6
2663 Female, age 72, unknown 90.6
2403 Male, age 62, unknown 88.7

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

166.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 166.3
FF:10154-103A1 76 years, female 166.3

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

374.7
Pig sample Sample description nTPM
Thalamus
nTPM: 374.7
Samples: 4

Max nTPM: 477.1
Min nTPM: 278.3
Sample A Female 477.1
Sample B Female 317.4
Sample C Male 425.8
Sample D Male 278.3

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

246.4
Mouse sample Sample description nTPM
Thalamus
nTPM: 246.4
Samples: 4

Max nTPM: 288.4
Min nTPM: 216.4
Sample A Male 288.4
Sample B Male 221.6
Sample C Female 259.1
Sample D Female 216.4

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

19.5
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 19.5
81600110 Antisense, RP_080205_02_D02, Mouse strain C57BL/6J (56 days, male) 19.9
413792 Antisense, RP_040809_01_E02, Mouse strain C57BL/6J (56 days, male) 19.0

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