We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TECR
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • TECR
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:214.6 nTPM
HPA Brain:184.8 nTPM
GTEx:214.6 nTPM
FANTOM5:257.8 Scaled Tags Per Million
Pig:447.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

184.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 163.2
1981 Female, age 72, midline 201.8
2565 Male, age 75, midline 176.0
2194 Female, age 79, both hemispheres 156.3
2816 Male, age 47, midline 150.3
2048 Male, age 55, midline 131.7
Cervical spinal cord, dorsal horn
nTPM: 184.8
2296 Male, age 66, both hemispheres 248.0
2173 Female, age 72, unknown 231.2
2069 Male, age 47, both hemispheres 180.3
1877 Male, age 55, unknown 153.1
2297 Male, age 75, both hemispheres 149.3
2721 Male, age 90, both hemispheres 147.1
Cervical spinal cord, ventral horn
nTPM: 161.2
2098 Female, age 72, unknown 193.1
2068 Male, age 55, unknown 168.3
2820 Female, age 79, both hemispheres 167.3
2295 Male, age 66, both hemispheres 148.7
2480 Male, age 75, both hemispheres 145.4
2809 Male, age 90, both hemispheres 144.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

214.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 214.6
Samples: 159

Max nTPM: 353.5
Min nTPM: 101.9
Std nTPM: 45.5
Median nTPM: 213.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 353.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 339.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 326.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 322.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 304.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 297.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 293.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 292.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 292.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 292.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 291.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 290.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 282.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 274.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 272.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 270.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 268.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 268.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 267.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 267.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 265.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 262.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 260.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 260.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 258.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 256.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 255.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 255.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 254.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 254.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 253.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 253.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 252.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 249.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 248.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 248.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 248.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 245.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 245.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 244.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 243.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 243.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 240.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 240.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 238.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 237.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 236.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 236.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 233.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 233.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 232.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 230.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 230.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 229.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 229.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 229.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 228.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 228.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 227.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 226.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 226.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 225.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 225.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 225.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 225.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 225.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 224.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 223.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 223.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 223.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 222.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 222.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 222.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 219.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 216.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 216.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 215.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 214.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 213.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 213.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 212.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 212.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 212.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 208.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 208.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 208.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 207.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 207.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 207.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 206.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 205.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 205.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 203.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 203.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 202.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 201.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 201.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 201.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 201.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 200.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 199.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 199.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 198.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 198.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 198.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 197.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 196.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 195.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 193.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 193.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 192.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 191.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 190.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 190.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 189.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 186.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 185.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 182.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 180.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 180.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 178.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 177.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 176.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 175.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 174.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 174.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 171.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 169.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 169.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 169.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 167.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 167.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 166.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 166.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 165.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 164.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 164.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 163.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 162.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 161.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 161.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 160.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 160.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 159.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 159.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 158.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 154.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 152.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 150.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 148.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 146.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 145.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 139.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 134.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 133.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 127.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 126.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 117.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 101.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

257.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 257.8
FF:10159-103A6 76 years, female 265.8
FF:10181-103D1 60 years, female 249.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

447.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 335.0
Samples: 4

Max nTPM: 371.6
Min nTPM: 319.8
Sample A Female 327.8
Sample B Female 319.8
Sample C Male 320.7
Sample D Male 371.6
Ventral spinal cord
nTPM: 447.9
Samples: 4

Max nTPM: 476.0
Min nTPM: 408.9
Sample A Female 448.4
Sample B Female 408.9
Sample C Male 458.3
Sample D Male 476.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org