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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
158.5
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 86.5
2301
Female, age 85, both hemispheres
112.1
1984
Male, age 76, both hemispheres
95.1
2090
Male, age 80, both hemispheres
73.0
2188
Female, age 91, both hemispheres
65.6
Dorsal cochlear nucleus nTPM: 89.3
2058
Male, age 76, both hemispheres
100.5
2802
Male, age 74, right hemisphere
94.2
2370
Male, age 61, both hemispheres
90.7
2187
Female, age 91, both hemispheres
89.6
2378
Male, age 80, both hemispheres
71.3
Dorsal tegmental nucleus nTPM: 85.0
2083
Male, age 80, both hemispheres
100.4
1936
Male, age 76, left hemisphere
93.5
2358
Male, age 61, both hemispheres
82.4
2326
Male, age 74, both hemispheres
63.8
Dorsolateral tegmental area nTPM: 87.2
2141
Male, age 76, both hemispheres
128.3
2751
Female, age 85, both hemispheres
100.8
2654
Male, age 80, both hemispheres
93.2
2360
Male, age 74, both hemispheres
70.2
2337
Male, age 61, both hemispheres
43.2
Kolliker-Fuse nucleus nTPM: 93.7
2163
Male, age 80, both hemispheres
99.7
2793
Female, age 91, left hemisphere
94.8
2315
Male, age 76, right hemisphere
86.6
Lateral lemniscal nuclei nTPM: 137.7
2169
Male, age 76, both hemispheres
157.2
2036
Male, age 80, both hemispheres
147.6
2746
Female, age 85, left hemisphere
146.5
2453
Male, age 74, right hemisphere
145.1
2320
Female, age 91, left hemisphere
92.4
Lateral parabrachial nucleus nTPM: 104.2
2139
Female, age 85, right hemisphere
166.9
2013
Male, age 80, both hemispheres
100.6
2790
Male, age 61, both hemispheres
85.7
2792
Male, age 76, both hemispheres
63.6
Lateral vestibular nucleus nTPM: 93.7
2184
Male, age 76, both hemispheres
100.3
2311
Male, age 80, both hemispheres
87.2
Locus coeruleus nTPM: 145.3
2123
Female, age 91, both hemispheres
177.6
2720
Male, age 74, both hemispheres
159.2
2788
Male, age 74, unknown
144.0
2014
Male, age 55, unknown
140.9
2162
Male, age 80, both hemispheres
135.0
2317
Female, age 72, unknown
131.4
1980
Male, age 76, both hemispheres
129.3
Medial parabrachial nucleus nTPM: 99.5
2854
Male, age 80, both hemispheres
119.1
2786
Male, age 76, both hemispheres
103.4
2170
Female, age 91, both hemispheres
92.6
2463
Female, age 85, right hemisphere
91.5
2156
Male, age 61, both hemispheres
91.1
Medial periolivary nuclei nTPM: 134.3
2171
Female, age 85, both hemispheres
212.7
2063
Male, age 76, both hemispheres
167.3
2791
Male, age 74, right hemisphere
123.2
2081
Male, age 80, both hemispheres
85.6
2458
Female, age 91, both hemispheres
82.7
Motor facial nucleus nTPM: 137.4
2062
Male, age 76, both hemispheres
181.9
2327
Male, age 80, both hemispheres
153.0
2365
Male, age 74, right hemisphere
143.0
2697
Female, age 85, both hemispheres
137.1
2795
Female, age 91, both hemispheres
106.8
2126
Male, age 61, both hemispheres
102.3
Motor trigeminal nucleus nTPM: 105.1
2079
Male, age 80, both hemispheres
131.8
2309
Male, age 76, both hemispheres
106.7
2560
Male, age 74, both hemispheres
105.9
2335
Male, age 61, both hemispheres
100.5
2321
Female, age 91, both hemispheres
80.6
Nuclei of the trapezoid body nTPM: 152.8
2735
Female, age 85, both hemispheres
211.7
1983
Male, age 76, both hemispheres
169.4
2159
Male, age 61, both hemispheres
166.0
2166
Male, age 80, both hemispheres
115.3
2368
Female, age 91, both hemispheres
101.8
Nucleus raphe magnus nTPM: 158.5
2172
Female, age 85, both hemispheres
235.6
2160
Male, age 61, both hemispheres
189.0
2455
Male, age 74, both hemispheres
165.0
2051
Male, age 76, both hemispheres
131.9
2328
Male, age 80, both hemispheres
128.4
2459
Female, age 91, both hemispheres
100.9
Paramedian reticular nucleus nTPM: 120.9
2050
Female, age 85, both hemispheres
165.1
2313
Male, age 61, both hemispheres
133.5
2057
Male, age 80, both hemispheres
100.2
2052
Male, age 76, both hemispheres
84.5
Pedunculopontine tegmental nucleus nTPM: 102.1
1921
Female, age 85, both hemispheres
126.0
2334
Male, age 80, both hemispheres
105.8
2338
Male, age 61, both hemispheres
74.4
Pontine nuclei nTPM: 132.2
2787
Female, age 85, both hemispheres
224.5
1863
Male, age 55, unknown
154.6
2727
Male, age 61, right hemisphere
152.8
1968
Male, age 76, left hemisphere
150.3
2109
Female, age 72, unknown
123.1
2115
Male, age 80, left hemisphere
99.7
2454
Male, age 74, left hemisphere
80.2
2319
Female, age 91, both hemispheres
72.3
Pontine raphe nucleus nTPM: 147.7
2122
Female, age 85, midline
158.6
2853
Male, age 76, midline
136.9
Posteroventral cochlear nucleus nTPM: 79.1
2752
Female, age 85, both hemispheres
145.2
2070
Male, age 76, both hemispheres
93.4
2371
Male, age 61, both hemispheres
70.3
2341
Male, age 80, both hemispheres
60.7
2135
Female, age 91, both hemispheres
25.8
Principal sensory trigeminal nucleus nTPM: 122.5
2158
Male, age 61, both hemispheres
161.3
2008
Male, age 80, left hemisphere
141.4
2324
Male, age 76, both hemispheres
98.3
2367
Female, age 91, left hemisphere
89.1
Reticular pontine nucleus, caudal nTPM: 103.2
2332
Male, age 80, right hemisphere
142.0
2092
Male, age 76, both hemispheres
126.1
2457
Female, age 91, both hemispheres
80.0
2559
Male, age 74, both hemispheres
64.7
Reticular pontine nucleus, oral nTPM: 108.3
2012
Female, age 85, both hemispheres
138.9
2167
Male, age 76, both hemispheres
116.3
2361
Male, age 74, both hemispheres
114.0
1939
Male, age 80, both hemispheres
101.0
2366
Female, age 91, both hemispheres
71.4
Reticulotegmental nucleus nTPM: 112.1
2325
Male, age 76, both hemispheres
151.1
2333
Male, age 80, both hemispheres
103.1
2452
Male, age 74, both hemispheres
98.2
2322
Female, age 91, both hemispheres
95.9
Spinal trigeminal nucleus, oral nTPM: 104.8
2737
Female, age 85, both hemispheres
110.1
1978
Male, age 76, both hemispheres
105.6
2164
Male, age 80, both hemispheres
98.6
Subcoeruleus area nTPM: 111.8
2323
Female, age 91, left hemisphere
141.2
2089
Male, age 76, left hemisphere
133.5
1958
Male, age 80, both hemispheres
126.5
2369
Female, age 85, left hemisphere
79.8
2451
Male, age 74, both hemispheres
77.8
Superior olive nTPM: 131.0
1875
Female, age 85, both hemispheres
177.6
2329
Male, age 80, right hemisphere
125.4
2364
Male, age 74, right hemisphere
124.4
2020
Male, age 76, both hemispheres
118.8
2561
Female, age 91, both hemispheres
108.8
Ventral periolivary nuclei nTPM: 153.3
2130
Female, age 85, both hemispheres
212.5
2165
Male, age 80, both hemispheres
154.7
2794
Female, age 91, left hemisphere
128.7
2023
Male, age 76, both hemispheres
117.1
Ventrolateral tegmental area, A5 NE cell group nTPM: 117.4
2449
Male, age 74, both hemispheres
152.8
2840
Female, age 85, both hemispheres
145.8
1959
Male, age 76, both hemispheres
134.7
2161
Male, age 80, both hemispheres
113.2
2359
Male, age 61, both hemispheres
87.0
2456
Female, age 91, both hemispheres
70.8
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
98.1
Pig sample
Sample description
nTPM
Pons nTPM: 98.1
Samples: 4
Max nTPM: 118.0
Min nTPM: 83.1
Sample A
Female
118.0
Sample B
Female
97.9
Sample C
Male
93.2
Sample D
Male
83.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
