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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:90.4 nTPM
HPA:46.6 nTPM
GTEx:90.4 nTPM
FANTOM5:173.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001209
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.6
overview
Male, age 65
Small intestine sample 232
nTPM: 50.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 48.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 44.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 42.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 90.4
Samples: 187

Max nTPM: 154.1
Min nTPM: 44.5
Std nTPM: 23.3
Median nTPM: 90.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 154.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 150.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 148.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 146.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 145.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 144.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 140.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 140.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 140.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 135.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 130.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 128.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 127.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 126.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 126.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 125.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 125.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 125.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 121.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 120.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 120.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 119.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 116.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 116.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 115.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 114.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 114.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 114.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 113.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 113.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 113.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 112.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 112.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 110.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 110.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 109.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 109.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 109.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 109.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 108.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 108.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 107.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 107.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 106.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 106.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 106.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 105.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 105.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 104.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 103.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 103.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 103.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 103.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 103.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 103.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 102.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 101.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 101.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 100.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 99.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 98.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 98.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 98.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 97.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 97.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 97.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 97.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 97.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 96.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 96.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 95.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 95.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 94.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 94.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 93.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 93.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 93.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 93.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 92.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 92.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 92.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 92.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 91.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 91.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 91.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 91.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 90.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 90.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 90.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 90.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 90.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 90.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 90.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 90.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 89.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 88.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 88.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 87.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 87.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 87.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 86.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 86.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 85.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 85.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 85.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 84.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 84.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 84.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 84.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 84.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 83.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 83.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 83.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 82.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 81.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 81.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 81.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 81.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 81.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 81.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 81.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 80.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 79.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 79.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 78.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 78.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 77.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 77.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 77.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 76.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 75.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 75.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 75.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 74.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 74.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 74.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 73.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 73.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 73.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 72.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 72.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 72.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 72.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 71.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 71.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 70.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 70.6
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 69.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 69.6
GTEX-1192X-2526-SM-59868 50-59 years, male 68.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 68.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 68.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 67.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 67.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 67.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 67.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 66.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 66.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 65.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 64.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 64.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 63.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 63.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 63.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 63.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 62.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 62.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 61.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 61.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 60.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 60.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 59.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 59.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 59.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 58.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 58.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 58.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 57.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 57.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 53.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 52.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 51.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 48.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 48.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 48.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 46.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 44.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

173.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 173.7
FF:10024-101D6 15,40,85 years, mixed 173.7

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