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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1275.5 nTPM
HPA Brain:611.1 nTPM
GTEx:1275.5 nTPM
FANTOM5:69.6 Scaled Tags Per Million
Pig:213.2 nTPM
Mouse:917.6 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

611.1
Sample id Sample description nTPM
Amygdala
nTPM: 582.8
2695 Female, age 67, right hemisphere 745.2
2514 Male, age 75, right hemisphere 599.7
2517 Female, age 94, left hemisphere 561.4
1987 Female, age 91, left hemisphere 545.5
2814 Male, age 76, right hemisphere 462.0
Basal amygdala
nTPM: 520.2
2827 Female, age 67, right hemisphere 711.8
2609 Male, age 75, right hemisphere 566.3
2110 Male, age 80, left hemisphere 536.0
2685 Female, age 94, left hemisphere 460.2
2243 Female, age 91, right hemisphere 438.2
1955 Male, age 76, both hemispheres 408.5
Central amygdala
nTPM: 583.5
2826 Female, age 94, left hemisphere 952.0
2515 Male, age 75, right hemisphere 670.7
2239 Male, age 80, left hemisphere 466.3
1905 Male, age 76, both hemispheres 429.9
2701 Female, age 91, right hemisphere 398.7
Corticomedial amygdala
nTPM: 481.7
2428 Male, age 75, right hemisphere 604.8
2535 Female, age 67, right hemisphere 524.4
2829 Male, age 80, left hemisphere 522.5
2242 Female, age 91, right hemisphere 447.6
2429 Female, age 94, left hemisphere 416.9
2240 Male, age 76, both hemispheres 374.2
Lateral amygdala
nTPM: 611.1
2830 Female, age 67, right hemisphere 944.8
2516 Male, age 75, right hemisphere 690.7
2534 Female, age 94, left hemisphere 630.7
2256 Male, age 80, left hemisphere 525.7
2255 Female, age 91, right hemisphere 451.3
1883 Male, age 76, both hemispheres 423.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1275.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1275.5
Samples: 152

Max nTPM: 2822.2
Min nTPM: 676.2
Std nTPM: 341.9
Median nTPM: 1210.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2822.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2465.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2439.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2290.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2191.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2191.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1920.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1846.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1843.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1839.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1831.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1828.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1809.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1733.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1713.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1713.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1704.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1691.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1666.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1638.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1595.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1584.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1556.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1536.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1525.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1520.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1506.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1492.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1485.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1484.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1483.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1451.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1422.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1413.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1390.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1388.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1377.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1375.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1373.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1371.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1367.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1364.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1359.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1350.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1349.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1346.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1332.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1328.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1328.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1327.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1314.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1312.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1310.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1310.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1306.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1305.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1299.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1295.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1295.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1293.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1287.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1287.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1284.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1274.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1272.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1271.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1261.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1253.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1251.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1245.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1243.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1233.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1227.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1224.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1222.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1211.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1208.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1203.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1203.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1202.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1198.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1196.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1191.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1185.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1184.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1181.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1180.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1177.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1171.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1170.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1156.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1149.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1149.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1145.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1139.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1137.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1133.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1131.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1119.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1113.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1112.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1106.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1105.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1103.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1096.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1093.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1092.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1081.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1072.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1071.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1070.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1059.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1059.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1057.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1056.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1048.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1047.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1046.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1043.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1025.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1020.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1019.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1015.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1013.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1005.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 995.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 995.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 993.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 991.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 976.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 970.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 958.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 955.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 953.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 951.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 936.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 918.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 917.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 915.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 894.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 888.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 881.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 879.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 856.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 855.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 850.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 843.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 841.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 832.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 799.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 734.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 676.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

69.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 69.6
FF:10151-102I7 76 years, female 69.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

213.2
Pig sample Sample description nTPM
Amygdala
nTPM: 213.1
Samples: 4

Max nTPM: 261.5
Min nTPM: 154.1
Sample A Female 261.5
Sample B Female 239.0
Sample C Male 197.9
Sample D Male 154.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

917.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 917.6
Samples: 4

Max nTPM: 943.9
Min nTPM: 890.4
Sample A Male 943.9
Sample B Male 943.9
Sample C Female 890.4
Sample D Female 892.1

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