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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:784.5 nTPM
GTEx:784.5 nTPM
FANTOM5:203.5 Scaled Tags Per Million
Pig:142.9 nTPM
Mouse:1114.5 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

784.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 784.5
Samples: 105

Max nTPM: 1175.0
Min nTPM: 293.7
Std nTPM: 204.4
Median nTPM:
322_1 76 years, male 1175.0
218_1 71 years, female 1122.5
389_1 86 years, female 1115.0
376_1 75 years, female 1112.1
377_1 82 years, female 1109.1
319_1 81 years, male 1107.2
384_1 83 years, male 1106.6
353_1 82 years, female 1084.7
352_1 62 years, male 1074.3
321_1 62 years, female 1073.6
355_1 70 years, female 1056.6
320_1 89 years, female 1043.5
386_1 76 years, male 1039.4
351_1 91 years, male 1028.5
452_1 88 years, female 1013.1
379_1 60 years, male 1000.6
163_1 78 years, male 986.8
349_1 83 years, male 983.5
189_1 76 years, male 982.7
318_1 68 years, male 980.3
354_1 81 years, female 965.9
350_1 84 years, female 962.2
394_1 75 years, female 953.4
177_1 74 years, male 952.7
292_1 71 years, male 949.7
17_1 71 years, male 946.8
2_1 77 years, female 945.9
335_1 73 years, female 937.5
4_1 88 years, female 934.4
246_1 77 years, male 923.7
6_1 73 years, female 917.7
243_1 75 years, male 914.6
293_1 68 years, female 913.1
251_1 78 years, male 905.9
35_1 74 years, female 904.5
153_1 70 years, female 886.1
404_1 82 years, female 885.8
503_1 68 years, male 880.1
447_1 81 years, male 873.0
406_1 79 years, male 872.3
405_1 91 years, male 869.3
172_1 72 years, female 868.7
356_1 87 years, female 864.9
526_1 61 years, male 849.5
348_1 84 years, male 831.2
317_1 60 years, male 826.8
120_1 70 years, female 826.1
375_1 74 years, female 825.1
137_1 83 years, male 824.3
173_1 67 years, male 823.0
425_1 59 years, female 821.9
295_1 61 years, female 821.1
291_1 76 years, male 812.0
18_1 88 years, male 807.0
145_1 84 years, male 796.0
126_1 63 years, male 794.0
316_1 62 years, male 793.8
517_1 88 years, male 789.1
229_1 69 years, female 786.4
518_1 75 years, female 771.5
286_1 68 years, female 759.8
115_1 83 years, male 752.4
237_1 82 years, male 751.6
254_1 77 years, female 748.6
468_1 89 years, male 730.8
506_1 65 years, male 728.2
311_1 78 years, male 724.4
307_1 66 years, female 723.9
139_1 64 years, female 719.8
109_1 81 years, female 709.0
264_1 73 years, female 709.0
265_1 87 years, male 662.8
315_1 62 years, female 653.6
217_1 76 years, male 653.0
480_1 63 years, male 648.4
99_1 64 years, male 647.1
288_1 66 years, female 645.0
266_1 85 years, male 640.9
495_1 57 years, female 617.2
396_1 62 years, male 613.7
41_1 94 years, female 609.3
347_1 72 years, male 602.8
499_1 55 years, female 591.6
324_1 76 years, male 588.0
117_1 61 years, male 574.9
414_1 84 years, female 563.7
42_1 85 years, male 555.4
308_1 70 years, female 554.6
162_1 79 years, female 542.4
81_1 67 years, male 527.9
314_1 67 years, male 519.6
142_1 61 years, female 518.3
9_1 66 years, female 505.0
415_1 77 years, female 502.1
119_1 70 years, female 488.8
32_1 67 years, male 482.7
466_1 57 years, female 480.8
501_1 88 years, male 477.9
89_1 63 years, male 476.9
43_1 64 years, female 449.2
313_1 79 years, female 446.1
491_1 89 years, female 388.4
149_1 88 years, male 385.1
413_1 59 years, female 384.4
490_1 67 years, female 293.7
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

203.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 203.5
FF:10030-101E3 24-65 years, mixed 203.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

142.9
Pig sample Sample description nTPM
Retina
nTPM: 142.9
Samples: 4

Max nTPM: 158.3
Min nTPM: 129.0
Sample A Female 131.3
Sample B Female 153.0
Sample C Male 158.3
Sample D Male 129.0

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1114.5
Mouse sample Sample description nTPM
Retina
nTPM: 1114.6
Samples: 4

Max nTPM: 1216.1
Min nTPM: 1008.7
Sample A Male 1216.1
Sample B Male 1008.7
Sample C Female 1156.1
Sample D Female 1077.3

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