MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:74.0 nTPM
HPA Brain:33.9 nTPM
GTEx:74.0 nTPM
FANTOM5:124.4 Scaled Tags Per Million
Pig:177.7 nTPM
Mouse:151.1 nTPM
Allen mouse:4.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 33.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.4
2019 Male, age 18, unknown 33.6
1870 Female, age 42, unknown 33.0
2411 Female, age 72, unknown 32.6
1827 Male, age 72, unknown 30.6
1833 Male, age 53, unknown 30.0
1830 Male, age 51, unknown 28.1
2828 Female, age 72, unknown 27.4
2219 Male, age 76, both hemispheres 24.7
2666 Male, age 74, left hemisphere 24.3
2586 Male, age 75, left hemisphere 20.1
Dorsal raphe nucleus
nTPM: 33.9
2750 Male, age 76, both hemispheres 39.5
2298 Female, age 72, unknown 37.9
1828 Male, age 53, unknown 34.0
2047 Male, age 72, unknown 31.4
2016 Female, age 72, unknown 26.9
Inferior colliculus
nTPM: 28.3
2097 Female, age 72, unknown 33.4
1890 Male, age 53, unknown 28.8
1848 Female, age 42, unknown 26.6
2849 Male, age 72, unknown 24.5
Median raphe nucleus
nTPM: 32.3
2220 Male, age 76, midline 32.3
Periaquaductal grey, anterior
nTPM: 29.0
1947 Male, age 18, unknown 31.1
2502 Female, age 75, unknown 30.4
1795 Male, age 51, unknown 25.4
Periaquaductal grey, dorsal
nTPM: 26.4
2464 Female, age 72, unknown 28.6
2850 Male, age 76, both hemispheres 26.9
1831 Male, age 72, unknown 26.0
1840 Male, age 53, unknown 24.2
Periaquaductal grey, lateral
nTPM: 27.4
2272 Male, age 74, both hemispheres 29.4
2053 Male, age 18, unknown 28.6
2140 Male, age 76, both hemispheres 24.2
Pretectal area
nTPM: 30.5
2007 Male, age 72, unknown 35.8
1816 Male, age 51, unknown 33.9
1817 Female, age 42, unknown 33.8
2224 Female, age 72, unknown 32.4
2316 Male, age 76, right hemisphere 32.3
1815 Male, age 53, unknown 32.2
1944 Female, age 72, unknown 30.1
2273 Male, age 74, both hemispheres 30.1
2825 Male, age 18, unknown 27.5
2667 Female, age 75, unknown 26.5
2407 Male, age 75, both hemispheres 21.1
Red nucleus
nTPM: 31.6
1821 Female, age 72, unknown 39.6
2823 Male, age 76, right hemisphere 35.3
2503 Female, age 72, unknown 34.8
2227 Male, age 72, unknown 32.7
1865 Male, age 51, unknown 32.6
1954 Female, age 42, unknown 32.3
2725 Female, age 75, unknown 31.4
1904 Male, age 53, unknown 30.5
2785 Male, age 18, unknown 30.1
2769 Male, age 72, unknown 30.0
2588 Male, age 74, left hemisphere 29.0
2584 Male, age 75, left hemisphere 20.3
Substantia nigra
nTPM: 30.9
1889 Female, age 72, unknown 37.5
1916 Female, age 42, unknown 36.0
1851 Male, age 51, unknown 35.0
1941 Male, age 53, unknown 32.4
2409 Female, age 72, unknown 30.9
2241 Male, age 72, unknown 30.6
2590 Female, age 75, unknown 30.6
2665 Male, age 74, both hemispheres 26.9
2699 Male, age 18, unknown 25.9
2583 Male, age 75, right hemisphere 23.4
Superior colliculus
nTPM: 28.8
2587 Male, age 74, left hemisphere 34.5
1895 Male, age 76, right hemisphere 32.1
2668 Female, age 75, unknown 30.9
1913 Female, age 42, unknown 30.7
1796 Male, age 53, unknown 28.6
2261 Male, age 18, unknown 28.4
1839 Male, age 51, unknown 27.8
1995 Male, age 72, unknown 27.4
2087 Female, age 72, unknown 26.7
2664 Male, age 75, both hemispheres 20.6
Ventral tegmental area
nTPM: 30.9
2410 Female, age 72, unknown 34.2
2218 Male, age 76, both hemispheres 32.8
1915 Female, age 42, unknown 32.1
2223 Female, age 72, unknown 31.8
2021 Male, age 53, unknown 27.5
1942 Male, age 51, unknown 26.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 74.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.0
Samples: 139

Max nTPM: 165.7
Min nTPM: 44.6
Std nTPM: 16.7
Median nTPM: 69.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 165.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 136.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 113.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 111.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 110.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 109.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 109.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 102.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 100.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 99.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 97.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 124.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 124.4
FF:10158-103A5 76 years, female 124.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 177.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 159.8
Samples: 4

Max nTPM: 208.1
Min nTPM: 132.6
Sample A Female 208.1
Sample B Female 132.6
Sample C Male 135.8
Sample D Male 162.6
Midbrain
nTPM: 177.7
Samples: 4

Max nTPM: 271.6
Min nTPM: 133.5
Sample A Female 271.6
Sample B Female 165.2
Sample C Male 133.5
Sample D Male 140.4
Periaqueductal gray
nTPM: 135.7
Samples: 3

Max nTPM: 139.2
Min nTPM: 133.6
Sample B Female 139.2
Sample C Male 133.6
Sample D Male 134.2
Superior colliculi
nTPM: 164.4
Samples: 4

Max nTPM: 199.8
Min nTPM: 122.9
Sample A Female 199.8
Sample B Female 122.9
Sample C Male 173.4
Sample D Male 161.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 151.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 151.1
Samples: 4

Max nTPM: 156.4
Min nTPM: 145.2
Sample A Male 156.4
Sample B Male 154.3
Sample C Female 145.2
Sample D Female 148.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
69262239 Antisense, RP_050301_01_G10, Mouse strain C57BL/6J (56 days, male) 4.7

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