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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:140.5 nTPM
HPA Brain:95.5 nTPM
GTEx:140.5 nTPM
FANTOM5:105.9 Scaled Tags Per Million
Pig:78.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 95.5
2816 Male, age 47, midline 109.6
2194 Female, age 79, both hemispheres 98.5
2565 Male, age 75, midline 94.3
1981 Female, age 72, midline 88.4
2048 Male, age 55, midline 86.8
Cervical spinal cord, dorsal horn
nTPM: 87.8
2721 Male, age 90, both hemispheres 112.1
2297 Male, age 75, both hemispheres 95.6
1877 Male, age 55, unknown 92.4
2296 Male, age 66, both hemispheres 79.8
2173 Female, age 72, unknown 74.3
2069 Male, age 47, both hemispheres 72.5
Cervical spinal cord, ventral horn
nTPM: 94.2
2820 Female, age 79, both hemispheres 124.7
2068 Male, age 55, unknown 105.7
2295 Male, age 66, both hemispheres 90.8
2809 Male, age 90, both hemispheres 84.9
2480 Male, age 75, both hemispheres 79.9
2098 Female, age 72, unknown 79.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 140.5
Samples: 159

Max nTPM: 268.0
Min nTPM: 82.9
Std nTPM: 26.6
Median nTPM: 138.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 268.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 208.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 200.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 194.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 194.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 192.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 191.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 190.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 188.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 187.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 185.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 184.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 181.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 179.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 179.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 173.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 173.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 171.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 171.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 170.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 169.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 167.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 166.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 166.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 164.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 164.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 160.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 160.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 160.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 159.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 159.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 158.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 158.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 158.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 158.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 157.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 157.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 156.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 156.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 155.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 155.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 155.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 154.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 153.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 153.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 153.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 151.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 151.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 151.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 151.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 150.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 149.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 149.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 149.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 148.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 148.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 148.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 148.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 148.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 148.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 147.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 147.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 146.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 145.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 144.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 144.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 144.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 143.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 142.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 141.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 141.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 140.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 139.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 139.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 139.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 139.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 139.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 138.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 138.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 138.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 137.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 137.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 136.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 136.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 136.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 135.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 134.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 134.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 134.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 133.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 133.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 133.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 133.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 132.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 132.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 131.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 131.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 130.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 130.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 130.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 130.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 129.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 129.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 129.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 129.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 128.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 127.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 127.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 127.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 127.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 127.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 124.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 124.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 123.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 122.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 122.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 122.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 121.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 121.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 121.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 120.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 120.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 119.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 118.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 118.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 118.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 118.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 118.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 117.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 117.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 116.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 116.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 116.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 116.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 115.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 115.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 115.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 113.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 113.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 113.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 113.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 113.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 112.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 109.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 109.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 109.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 108.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 107.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 106.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 105.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 104.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 97.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 96.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 95.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 95.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 94.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 89.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 89.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 82.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

105.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 105.9
FF:10159-103A6 76 years, female 132.0
FF:10181-103D1 60 years, female 79.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 78.4
Samples: 4

Max nTPM: 86.6
Min nTPM: 65.5
Sample A Female 80.9
Sample B Female 80.4
Sample C Male 65.5
Sample D Male 86.6
Ventral spinal cord
nTPM: 75.7
Samples: 4

Max nTPM: 87.4
Min nTPM: 66.1
Sample A Female 74.3
Sample B Female 74.8
Sample C Male 66.1
Sample D Male 87.4

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