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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:128.7 nTPM
HPA Brain:125.3 nTPM
GTEx:128.7 nTPM
FANTOM5:80.9 Scaled Tags Per Million
Pig:110.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 113.2
2194 Female, age 79, both hemispheres 119.4
2565 Male, age 75, midline 119.4
1981 Female, age 72, midline 115.5
2816 Male, age 47, midline 115.3
2048 Male, age 55, midline 96.3
Cervical spinal cord, dorsal horn
nTPM: 121.7
2296 Male, age 66, both hemispheres 175.0
2173 Female, age 72, unknown 136.5
2069 Male, age 47, both hemispheres 122.6
1877 Male, age 55, unknown 114.0
2297 Male, age 75, both hemispheres 98.8
2721 Male, age 90, both hemispheres 83.3
Cervical spinal cord, ventral horn
nTPM: 125.3
2480 Male, age 75, both hemispheres 138.6
2068 Male, age 55, unknown 133.1
2820 Female, age 79, both hemispheres 129.0
2295 Male, age 66, both hemispheres 119.0
2098 Female, age 72, unknown 116.9
2809 Male, age 90, both hemispheres 115.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 128.7
Samples: 159

Max nTPM: 210.6
Min nTPM: 49.6
Std nTPM: 31.6
Median nTPM: 124.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 210.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 209.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 207.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 200.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 192.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 188.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 188.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 186.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 183.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 182.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 182.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 180.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 179.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 178.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 178.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 176.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 174.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 173.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 172.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 166.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 165.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 163.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 163.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 162.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 162.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 161.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 158.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 157.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 157.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 157.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 156.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 155.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 153.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 153.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 153.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 152.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 151.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 149.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 149.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 149.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 149.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 148.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 146.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 145.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 145.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 145.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 143.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 143.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 143.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 142.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 142.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 141.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 140.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 140.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 140.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 138.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 138.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 137.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 137.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 136.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 135.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 135.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 135.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 135.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 135.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 134.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 134.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 131.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 131.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 131.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 130.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 130.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 127.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 127.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 126.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 126.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 125.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 125.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 125.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 124.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 124.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 123.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 123.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 122.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 122.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 122.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 122.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 121.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 121.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 120.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 120.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 120.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 119.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 119.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 119.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 117.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 116.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 116.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 116.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 116.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 115.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 115.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 114.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 114.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 113.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 113.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 113.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 112.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 112.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 112.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 111.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 111.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 110.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 110.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 109.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 109.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 108.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 108.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 108.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 106.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 104.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 103.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 103.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 102.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 101.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 100.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 99.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 99.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 99.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 99.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 98.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 98.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 98.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 98.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 97.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 97.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 96.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 94.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 94.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 93.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 93.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 93.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 93.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 93.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 91.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 91.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 85.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 84.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 84.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 83.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 81.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 81.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 80.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 74.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 72.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 70.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 69.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 65.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 49.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

80.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 80.9
FF:10181-103D1 60 years, female 89.2
FF:10159-103A6 76 years, female 72.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 97.4
Samples: 4

Max nTPM: 101.3
Min nTPM: 94.3
Sample A Female 101.3
Sample B Female 98.5
Sample C Male 94.3
Sample D Male 95.6
Ventral spinal cord
nTPM: 110.1
Samples: 4

Max nTPM: 118.0
Min nTPM: 101.2
Sample A Female 106.0
Sample B Female 115.1
Sample C Male 101.2
Sample D Male 118.0

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