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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: High
Enterocytes: Not detected
Enterocytes - Microvilli: Low
Goblet cells: Not detected
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1247.9 nTPM
HPA:335.4 nTPM
GTEx:1247.9 nTPM
FANTOM5:2042.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA039262Antibody HPA045244Antibody HPA059197
Endocrine cells --High
Enterocytes --Not detected
Enterocytes - Microvilli --Low
Glandular cells LowLow-
Goblet cells --Not detected
Paneth cells --Not detected







SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

335.4
overview
Male, age 65
Small intestine sample 232
nTPM: 85
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 383.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 428.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 444.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1247.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1247.9
Samples: 187

Max nTPM: 11595.0
Min nTPM: 79.8
Std nTPM: 1998.7
Median nTPM: 308.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 11595.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 7834.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 7637.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 7023.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 6964.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 6800.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 6737.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 6409.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 6264.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 5914.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 5877.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 5861.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 5747.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 5746.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 5668.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 5461.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 5090.4
GTEX-1192X-2526-SM-59868 50-59 years, male 4922.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 4640.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 4579.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 4322.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 3747.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 3739.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 3678.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 3496.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 3304.4
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 3265.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 3093.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 3089.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 3032.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 2755.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2136.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 2003.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1984.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1930.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1928.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1827.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1761.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1721.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1596.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1344.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1312.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1205.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1194.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1112.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 940.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 927.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 892.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 884.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 879.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 851.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 838.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 820.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 736.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 711.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 677.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 665.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 656.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 648.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 641.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 631.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 573.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 571.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 557.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 548.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 534.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 525.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 501.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 499.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 490.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 438.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 431.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 430.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 428.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 422.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 415.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 404.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 402.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 397.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 396.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 393.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 392.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 384.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 377.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 375.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 355.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 345.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 341.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 335.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 331.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 321.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 314.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 314.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 308.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 307.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 302.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 300.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 297.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 295.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 294.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 293.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 290.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 283.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 283.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 281.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 279.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 278.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 275.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 272.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 272.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 267.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 264.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 261.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 258.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 256.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 254.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 252.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 248.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 247.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 245.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 244.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 243.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 241.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 239.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 238.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 236.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 236.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 236.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 235.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 233.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 231.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 229.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 228.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 223.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 223.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 222.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 222.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 217.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 210.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 209.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 208.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 208.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 206.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 206.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 205.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 205.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 205.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 203.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 202.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 202.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 199.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 199.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 197.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 195.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 191.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 190.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 186.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 184.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 181.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 181.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 181.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 179.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 178.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 177.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 176.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 175.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 174.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 172.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 169.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 165.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 162.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 161.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 157.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 152.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 152.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 152.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 146.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 146.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 134.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 129.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 128.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 126.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 121.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 118.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 104.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 84.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 79.8
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2042.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 2042.3
FF:10024-101D6 15,40,85 years, mixed 2042.3

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