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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:912.5 nTPM
GTEx:912.5 nTPM
FANTOM5:3092.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA039262Antibody HPA045244Antibody HPA059197
Squamous epithelial cells Not detectedNot detectedMedium






VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

912.5
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 912.5
Samples: 156

Max nTPM: 4793.9
Min nTPM: 40.9
Std nTPM: 942.3
Median nTPM: 626.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 4793.9
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 4712.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 3800.3
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 3629.1
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 3346.7
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 3259.8
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 3195.6
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 3170.4
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 3064.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 2968.9
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 2823.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 2670.8
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 2670.6
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 2576.4
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 2534.2
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 2358.4
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 2281.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 2126.6
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1909.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1893.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1847.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1820.9
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1760.3
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1755.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1647.6
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1565.2
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1564.6
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1531.0
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 1515.7
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 1422.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1300.2
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1291.4
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1290.6
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1280.2
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1263.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1227.3
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1180.0
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1177.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1171.3
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1121.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1105.0
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1051.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1038.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1034.6
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1032.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1030.9
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1020.5
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 982.9
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 978.4
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 964.3
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 947.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 865.2
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 848.1
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 820.3
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 811.0
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 808.3
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 805.1
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 798.4
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 794.4
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 785.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 778.3
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 770.1
GTEX-16NPV-2526-SM-6M483 50-59 years, female 758.5
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 754.7
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 742.0
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 736.1
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 734.1
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 731.5
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 720.1
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 707.5
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 695.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 686.3
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 665.6
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 663.1
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 649.6
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 643.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 636.6
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 635.0
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 618.4
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 615.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 600.3
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 594.6
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 577.2
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 572.9
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 566.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 525.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 503.2
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 493.7
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 484.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 478.3
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 473.8
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 464.9
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 462.0
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 453.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 446.4
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 444.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 444.2
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 438.8
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 431.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 429.7
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 426.6
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 397.0
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 392.8
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 389.0
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 383.8
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 376.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 375.4
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 367.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 349.2
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 342.9
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 325.2
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 312.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 305.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 303.6
GTEX-1C475-0526-SM-793AC 40-49 years, female 303.5
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 266.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 263.8
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 260.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 257.8
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 254.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 250.2
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 221.4
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 218.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 215.5
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 207.7
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 205.7
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 205.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 204.7
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 201.3
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 179.8
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 173.2
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 157.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 146.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 145.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 141.9
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 141.2
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 139.8
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 138.6
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 135.7
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 131.4
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 128.0
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 127.9
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 127.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 92.7
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 91.3
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 85.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 82.8
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 74.6
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 70.0
GTEX-11I78-2026-SM-5987C 50-59 years, female 65.1
GTEX-14PKU-1326-SM-6871B 40-49 years, female 63.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 60.9
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 56.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 49.6
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 45.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 40.9
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3092.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 3092.9
FF:10204-103F6 68 years, female 3092.9

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