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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:127.0 nTPM
HPA Brain:93.1 nTPM
GTEx:127.0 nTPM
FANTOM5:121.7 Scaled Tags Per Million
Pig:163.4 nTPM
Mouse:458.4 nTPM
Allen mouse:21.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.1
Sample id Sample description nTPM
Amygdala
nTPM: 88.5
1987 Female, age 91, left hemisphere 107.8
2514 Male, age 75, right hemisphere 94.8
2517 Female, age 94, left hemisphere 90.0
2814 Male, age 76, right hemisphere 87.7
2695 Female, age 67, right hemisphere 62.1
Basal amygdala
nTPM: 82.5
2110 Male, age 80, left hemisphere 108.6
2243 Female, age 91, right hemisphere 103.7
2685 Female, age 94, left hemisphere 88.1
1955 Male, age 76, both hemispheres 86.0
2609 Male, age 75, right hemisphere 57.9
2827 Female, age 67, right hemisphere 50.7
Central amygdala
nTPM: 86.3
2239 Male, age 80, left hemisphere 112.7
1905 Male, age 76, both hemispheres 83.6
2701 Female, age 91, right hemisphere 83.4
2826 Female, age 94, left hemisphere 78.8
2515 Male, age 75, right hemisphere 73.0
Corticomedial amygdala
nTPM: 93.1
2829 Male, age 80, left hemisphere 124.8
2429 Female, age 94, left hemisphere 111.2
2242 Female, age 91, right hemisphere 92.1
2240 Male, age 76, both hemispheres 86.9
2428 Male, age 75, right hemisphere 72.2
2535 Female, age 67, right hemisphere 71.1
Lateral amygdala
nTPM: 77.6
2534 Female, age 94, left hemisphere 96.1
1883 Male, age 76, both hemispheres 93.5
2255 Female, age 91, right hemisphere 77.2
2516 Male, age 75, right hemisphere 72.6
2256 Male, age 80, left hemisphere 71.5
2830 Female, age 67, right hemisphere 54.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 127.0
Samples: 152

Max nTPM: 248.2
Min nTPM: 43.0
Std nTPM: 37.4
Median nTPM: 127.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 248.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 232.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 230.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 212.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 203.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 195.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 195.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 194.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 190.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 190.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 187.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 184.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 181.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 181.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 180.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 178.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 177.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 175.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 165.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 165.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 164.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 162.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 161.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 161.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 161.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 159.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 159.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 158.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 157.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 154.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 154.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 153.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 153.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 152.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 151.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 151.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 150.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 149.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 147.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 146.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 146.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 145.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 145.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 144.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 144.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 143.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 142.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 141.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 141.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 141.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 139.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 139.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 139.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 139.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 139.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 139.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 138.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 138.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 137.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 137.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 136.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 136.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 136.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 136.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 135.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 134.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 133.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 133.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 132.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 131.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 130.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 130.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 130.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 128.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 128.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 127.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 126.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 123.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 122.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 121.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 121.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 121.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 120.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 119.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 119.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 119.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 119.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 119.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 116.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 114.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 113.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 113.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 112.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 110.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 110.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 110.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 109.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 109.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 109.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 108.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 108.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 108.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 108.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 107.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 107.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 106.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 103.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 103.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 102.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 102.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 101.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 101.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 101.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 100.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 100.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 100.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 99.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 98.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 98.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 98.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 97.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 97.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 95.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 93.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 91.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 90.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 90.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 90.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 87.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 86.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 85.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 85.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 84.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 83.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 82.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 81.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 80.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 79.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 79.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 78.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 77.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 76.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 75.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 75.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 71.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 67.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 65.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 64.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 60.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 58.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 53.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 43.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

121.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 121.7
FF:10151-102I7 76 years, female 121.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

163.4
Pig sample Sample description nTPM
Amygdala
nTPM: 163.4
Samples: 4

Max nTPM: 233.5
Min nTPM: 124.9
Sample A Female 233.5
Sample B Female 138.7
Sample C Male 124.9
Sample D Male 156.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

458.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 458.4
Samples: 4

Max nTPM: 502.5
Min nTPM: 365.9
Sample A Male 502.5
Sample B Male 475.0
Sample C Female 365.9
Sample D Female 490.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.5
77454574 Antisense, RP_070129_01_A03, Mouse strain C57BL/6J (56 days, male) 31.6
2478 Antisense, RP_Baylor_103188, Mouse strain C57BL/6J (56 days, male) 21.3
2479 Antisense, RP_Baylor_103188, Mouse strain C57BL/6J (56 days, male) 14.7
797 Antisense, RP_040324_01_A05, Mouse strain C57BL/6J (56 days, male) 11.5

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