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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
757.9
Sample id
Sample description
nTPM
Amygdala nTPM: 551.4
1987
Female, age 91, left hemisphere
658.3
2695
Female, age 67, right hemisphere
626.3
2814
Male, age 76, right hemisphere
582.5
2517
Female, age 94, left hemisphere
542.3
2514
Male, age 75, right hemisphere
347.6
Basal amygdala nTPM: 614.1
2685
Female, age 94, left hemisphere
754.5
2243
Female, age 91, right hemisphere
709.2
2110
Male, age 80, left hemisphere
644.6
2827
Female, age 67, right hemisphere
563.2
1955
Male, age 76, both hemispheres
538.1
2609
Male, age 75, right hemisphere
475.2
Central amygdala nTPM: 757.9
2826
Female, age 94, left hemisphere
985.3
2701
Female, age 91, right hemisphere
897.6
2239
Male, age 80, left hemisphere
796.0
2515
Male, age 75, right hemisphere
572.2
1905
Male, age 76, both hemispheres
538.4
Corticomedial amygdala nTPM: 554.0
2829
Male, age 80, left hemisphere
707.2
2242
Female, age 91, right hemisphere
705.4
2535
Female, age 67, right hemisphere
594.6
2429
Female, age 94, left hemisphere
528.7
2240
Male, age 76, both hemispheres
437.2
2428
Male, age 75, right hemisphere
350.7
Lateral amygdala nTPM: 611.4
2255
Female, age 91, right hemisphere
872.7
2534
Female, age 94, left hemisphere
870.7
2256
Male, age 80, left hemisphere
597.2
1883
Male, age 76, both hemispheres
474.7
2830
Female, age 67, right hemisphere
463.8
2516
Male, age 75, right hemisphere
389.4
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
497.4
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 497.4
Samples: 152
Max nTPM: 1659.0
Min nTPM: 38.3
Std nTPM: 257.3
Median nTPM: 455.5
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
1659.0
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
1322.7
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
1192.0
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
1119.4
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
1030.9
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
1011.6
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
1007.3
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
943.2
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
935.4
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
915.3
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
888.8
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
887.8
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
885.6
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
884.6
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
866.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
846.8
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
844.4
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
819.6
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
801.4
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
799.7
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
794.2
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
785.7
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
772.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
745.5
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
731.3
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
714.6
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
687.6
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
680.0
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
666.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
659.4
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
650.9
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
642.0
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
635.3
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
635.3
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
631.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
625.6
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
620.4
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
620.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
614.6
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
608.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
606.0
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
604.1
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
600.6
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
598.6
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
595.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
590.9
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
580.3
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
577.1
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
574.2
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
559.3
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
557.7
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
553.4
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
552.0
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
549.0
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
547.6
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
547.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
544.9
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
540.6
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
540.3
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
537.6
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
534.5
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
534.2
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
530.4
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
528.4
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
527.8
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
522.5
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
509.8
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
509.5
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
494.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
484.3
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
481.5
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
477.3
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
473.3
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
466.9
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
462.3
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
457.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
453.3
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
448.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
448.0
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
446.4
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
445.3
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
437.6
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
435.7
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
430.9
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
430.9
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
429.5
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
429.1
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
422.4
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
420.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
419.7
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
417.4
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
417.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
416.2
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
405.1
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
400.9
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
399.5
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
395.8
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
392.4
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
387.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
387.5
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
379.7
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
379.3
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
374.6
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
357.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
348.7
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
348.2
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
341.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
339.1
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
331.6
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
327.0
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
323.8
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
319.6
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
312.9
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
308.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
305.6
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
302.6
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
302.4
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
297.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
297.5
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
291.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
289.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
287.4
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
276.5
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
273.6
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
259.7
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
255.9
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
249.0
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
246.3
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
244.5
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
237.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
234.5
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
232.1
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
228.9
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
220.9
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
209.2
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
204.0
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
195.8
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
190.5
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
187.5
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
182.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
177.9
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
171.2
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
168.8
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
167.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
165.5
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
163.7
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
161.7
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
139.3
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
138.1
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
111.9
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
60.1
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
38.3
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
77.5
Mouse sample
Sample description
nTPM
Amygdala nTPM: 77.5
Samples: 4
Max nTPM: 124.5
Min nTPM: 52.0
Sample A
Male
77.5
Sample B
Male
56.1
Sample C
Female
124.5
Sample D
Female
52.0
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
