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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

98.425
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:184.0 nTPM
FANTOM5:125.0 Scaled Tags Per Million
Pig:65.5 nTPM
Allen mouse:8.0 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA037536
Medulla oblongata mean intensity 98.425
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract 66.702
Raphe magnus nucleus 36.025
Cochlear nucleus 34.658
Lateral paragigantocellular nucleus 28.829
Raphe pallidus nucleus 33.685
Facial nucleus 44.991
Hypoglossal nucleus 33.299
Ambiguus nucleus 25.580
External cuneate nucleus 35.171
Inferior olivary nucleus 20.504
Raphe obscures nucleus 27.837
Dorsal motor nucleus of vagus 34.157

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

184.0
Sample id Sample description nTPM
Area postrema
nTPM: 112.2
2054 Male, age 76, both hemispheres 148.9
2799 Male, age 61, both hemispheres 103.1
2306 Male, age 80, both hemispheres 84.4
Dorsal medullary reticular nucleus
nTPM: 158.4
2040 Female, age 85, both hemispheres 198.5
2088 Male, age 76, both hemispheres 144.8
2373 Male, age 61, both hemispheres 132.1
Dorsal motor vagal complex
nTPM: 165.2
2844 Male, age 55, unknown 242.4
2813 Female, age 72, unknown 200.4
2133 Female, age 91, both hemispheres 188.6
2000 Male, age 74, unknown 169.8
2643 Male, age 74, both hemispheres 147.0
2797 Male, age 61, both hemispheres 133.4
2185 Male, age 76, both hemispheres 128.0
2807 Female, age 85, both hemispheres 111.7
Gigantocellular reticular nuclei, medullary
nTPM: 141.4
2022 Male, age 76, right hemisphere 174.3
1876 Female, age 85, both hemispheres 168.2
2462 Male, age 74, both hemispheres 147.1
2310 Male, age 80, both hemispheres 130.8
2387 Female, age 91, both hemispheres 117.8
2314 Male, age 61, both hemispheres 110.1
Gigantocellular reticular nuclei, pars
nTPM: 138.7
2084 Female, age 85, both hemispheres 186.5
2336 Male, age 61, both hemispheres 163.4
2168 Male, age 76, both hemispheres 157.3
2330 Male, age 80, both hemispheres 94.1
2706 Male, age 80, both hemispheres 92.3
Inferior olive
nTPM: 103.8
2563 Male, age 74, both hemispheres 118.5
2085 Female, age 85, both hemispheres 111.3
2628 Female, age 91, both hemispheres 106.2
2178 Male, age 61, both hemispheres 103.3
2379 Male, age 80, both hemispheres 79.7
Lateral medullary reticular nucleus
nTPM: 117.7
2044 Male, age 76, both hemispheres 130.7
2190 Female, age 85, both hemispheres 125.8
2305 Male, age 74, both hemispheres 118.7
2374 Male, age 61, both hemispheres 116.7
2852 Male, age 80, both hemispheres 113.6
2804 Female, age 91, both hemispheres 100.5
Medial olivary nucleus
nTPM: 95.8
2138 Female, age 91, both hemispheres 105.1
1962 Male, age 76, both hemispheres 95.3
2851 Male, age 80, both hemispheres 92.9
1943 Male, age 61, both hemispheres 90.0
Medial vestibular nucleus
nTPM: 154.0
2134 Male, age 76, both hemispheres 163.3
2093 Male, age 80, both hemispheres 158.6
2743 Female, age 85, both hemispheres 157.4
2803 Female, age 91, both hemispheres 156.5
2801 Male, age 74, both hemispheres 146.3
2624 Male, age 61, both hemispheres 141.8
Motor hypoglossal nucleus
nTPM: 167.8
2461 Male, age 61, both hemispheres 181.9
2277 Male, age 76, both hemispheres 175.1
2132 Female, age 85, both hemispheres 174.2
2125 Female, age 91, both hemispheres 160.1
2182 Male, age 80, both hemispheres 147.9
Nucleus ambiguus
nTPM: 165.7
2096 Female, age 85, both hemispheres 224.0
2071 Male, age 76, both hemispheres 107.5
Nucleus cuneatus
nTPM: 114.7
2562 Male, age 61, both hemispheres 174.9
2131 Male, age 76, both hemispheres 130.2
2564 Male, age 74, both hemispheres 127.7
2100 Male, age 76, both hemispheres 113.1
2376 Male, age 61, both hemispheres 113.0
2381 Male, age 80, both hemispheres 109.5
2805 Female, age 91, both hemispheres 98.8
2808 Female, age 85, both hemispheres 84.8
2380 Male, age 80, both hemispheres 80.5
Nucleus gracilis
nTPM: 102.8
2627 Male, age 74, both hemispheres 136.7
2382 Male, age 80, both hemispheres 88.3
2299 Female, age 85, both hemispheres 83.4
Nucleus raphe obscurus
nTPM: 110.3
2800 Male, age 61, midline 125.6
2845 Female, age 85, midline 111.0
2142 Male, age 76, midline 94.2
Nucleus raphe pallidus
nTPM: 121.6
2183 Male, age 80, midline 165.2
1924 Male, age 61, midline 110.1
2145 Male, age 76, midline 89.5
Nucleus tractus solitarii
nTPM: 151.1
2656 Male, age 76, both hemispheres 225.7
2307 Male, age 80, both hemispheres 150.7
2191 Female, age 85, both hemispheres 124.2
2144 Female, age 91, right hemisphere 103.7
Parvicellular reticular nuclei
nTPM: 135.1
2119 Male, age 80, both hemispheres 156.2
2558 Male, age 74, both hemispheres 131.8
2095 Male, age 76, both hemispheres 117.5
Parvicellular reticular nuclei, medullary
nTPM: 184.0
2181 Male, age 80, left hemisphere 199.2
2189 Female, age 91, both hemispheres 191.7
2091 Female, age 85, both hemispheres 161.0
Peritrigeminal nucleus
nTPM: 127.1
2179 Male, age 61, both hemispheres 136.9
2067 Female, age 85, both hemispheres 134.4
2136 Male, age 76, both hemispheres 110.1
Prepositus hypoglossal nucleus
nTPM: 141.6
2855 Female, age 85, right hemisphere 143.0
2086 Male, age 80, both hemispheres 140.3
Spinal trigeminal nucleus, caudal
nTPM: 143.9
2390 Female, age 91, both hemispheres 166.6
2447 Male, age 76, both hemispheres 144.7
2642 Male, age 74, both hemispheres 141.6
2308 Male, age 80, both hemispheres 133.4
2312 Male, age 61, both hemispheres 133.2
Spinal trigeminal nucleus, interpolar
nTPM: 162.0
2033 Male, age 80, both hemispheres 180.5
2386 Female, age 85, both hemispheres 173.6
2625 Male, age 61, both hemispheres 172.8
2389 Female, age 91, both hemispheres 143.5
2066 Male, age 76, right hemisphere 139.9
Spinal vestibular nucleus
nTPM: 157.8
2780 Male, age 80, both hemispheres 191.2
2186 Female, age 91, both hemispheres 177.3
2748 Male, age 76, both hemispheres 155.3
2806 Female, age 85, both hemispheres 152.9
2796 Male, age 61, both hemispheres 141.2
2384 Male, age 74, both hemispheres 129.2
Superior vestibular nucleus
nTPM: 148.2
2015 Male, age 80, both hemispheres 156.4
2061 Male, age 76, both hemispheres 147.8
2383 Male, age 74, both hemispheres 140.4
Ventral medullary reticular nucleus
nTPM: 150.3
2060 Male, age 76, both hemispheres 177.8
2372 Male, age 61, both hemispheres 122.8
Ventrolateral medulla, A1-C1 cell groups
nTPM: 121.8
2180 Male, age 61, both hemispheres 150.5
2741 Female, age 85, both hemispheres 142.8
1986 Male, age 76, both hemispheres 117.7
2302 Female, age 91, both hemispheres 103.9
2118 Male, age 80, both hemispheres 94.3

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

125.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 125.0
FF:10038-101F2 18-64 years, mixed 173.8
FF:10155-103A2 76 years, female 102.1
FF:10174-103C3 60 years, female 99.1

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 65.6
Samples: 4

Max nTPM: 74.9
Min nTPM: 49.5
Sample A Female 66.4
Sample B Female 71.4
Sample C Male 74.9
Sample D Male 49.5

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.0
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 8.0
77620309 Antisense, RP_070205_01_A10, Mouse strain C57BL/6J (56 days, male) 8.5
355883 Antisense, RP_040617_01_F01, Mouse strain C57BL/6J (56 days, male) 7.5
77869130 Antisense, RP_070205_01_A10, Mouse strain C57BL/6J (56 days, male) 4.4
293903 Antisense, RP_040617_01_F01, Mouse strain C57BL/6J (56 days, male) 4.0

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