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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:229.8 nTPM
HPA Brain:101.3 nTPM
GTEx:229.8 nTPM
FANTOM5:490.5 Scaled Tags Per Million
Pig:100.6 nTPM
Mouse:48.5 nTPM
Allen mouse:4.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.3
Sample id Sample description nTPM
Amygdala
nTPM: 96.3
2814 Male, age 76, right hemisphere 110.8
2514 Male, age 75, right hemisphere 104.4
1987 Female, age 91, left hemisphere 103.7
2517 Female, age 94, left hemisphere 82.1
2695 Female, age 67, right hemisphere 80.3
Basal amygdala
nTPM: 89.9
1955 Male, age 76, both hemispheres 107.5
2110 Male, age 80, left hemisphere 105.8
2243 Female, age 91, right hemisphere 104.9
2685 Female, age 94, left hemisphere 84.4
2609 Male, age 75, right hemisphere 81.0
2827 Female, age 67, right hemisphere 56.1
Central amygdala
nTPM: 89.1
2239 Male, age 80, left hemisphere 102.4
2701 Female, age 91, right hemisphere 99.2
1905 Male, age 76, both hemispheres 95.0
2515 Male, age 75, right hemisphere 76.5
2826 Female, age 94, left hemisphere 72.2
Corticomedial amygdala
nTPM: 101.3
2240 Male, age 76, both hemispheres 113.8
2429 Female, age 94, left hemisphere 111.0
2829 Male, age 80, left hemisphere 109.4
2242 Female, age 91, right hemisphere 109.2
2535 Female, age 67, right hemisphere 83.0
2428 Male, age 75, right hemisphere 81.5
Lateral amygdala
nTPM: 76.2
1883 Male, age 76, both hemispheres 104.4
2534 Female, age 94, left hemisphere 83.3
2516 Male, age 75, right hemisphere 82.5
2255 Female, age 91, right hemisphere 73.3
2256 Male, age 80, left hemisphere 67.7
2830 Female, age 67, right hemisphere 46.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

229.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 229.8
Samples: 152

Max nTPM: 464.3
Min nTPM: 53.8
Std nTPM: 70.6
Median nTPM: 223.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 464.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 461.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 420.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 392.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 388.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 373.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 372.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 349.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 349.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 338.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 335.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 331.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 320.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 320.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 318.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 317.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 316.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 312.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 310.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 310.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 302.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 299.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 298.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 293.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 293.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 292.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 287.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 284.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 283.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 281.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 280.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 279.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 278.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 277.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 277.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 275.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 274.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 271.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 267.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 267.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 266.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 266.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 259.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 259.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 257.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 255.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 255.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 254.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 252.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 252.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 252.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 251.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 250.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 249.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 249.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 249.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 248.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 248.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 246.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 246.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 245.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 243.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 243.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 241.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 237.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 236.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 234.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 233.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 232.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 232.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 230.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 229.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 228.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 226.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 224.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 223.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 223.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 222.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 221.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 220.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 220.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 220.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 218.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 218.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 217.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 215.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 215.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 215.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 213.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 213.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 212.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 211.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 209.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 209.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 209.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 208.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 208.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 205.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 202.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 201.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 200.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 198.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 196.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 193.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 193.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 192.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 190.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 187.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 186.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 186.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 184.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 184.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 182.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 181.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 179.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 178.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 175.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 174.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 172.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 171.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 170.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 169.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 167.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 165.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 165.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 164.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 163.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 162.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 160.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 160.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 155.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 155.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 152.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 150.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 150.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 149.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 147.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 146.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 145.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 143.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 140.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 135.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 128.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 127.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 126.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 125.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 120.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 118.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 98.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 90.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 80.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 53.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

490.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 490.5
FF:10151-102I7 76 years, female 490.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.6
Pig sample Sample description nTPM
Amygdala
nTPM: 100.6
Samples: 4

Max nTPM: 139.7
Min nTPM: 87.2
Sample A Female 139.7
Sample B Female 87.2
Sample C Male 87.9
Sample D Male 87.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 48.5
Samples: 4

Max nTPM: 51.9
Min nTPM: 39.6
Sample A Male 51.0
Sample B Male 51.9
Sample C Female 39.6
Sample D Female 51.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.0
69201534 Antisense, RP_050317_03_B02, Mouse strain C57BL/6J (56 days, male) 4.0

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