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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:150.7 nTPM
HPA Brain:376.8 nTPM
GTEx:150.7 nTPM
FANTOM5:378.4 Scaled Tags Per Million
Pig:269.9 nTPM
Mouse:1008.1 nTPM
Allen mouse:27.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

376.8
Sample id Sample description nTPM
Amygdala
nTPM: 334.2
2814 Male, age 76, right hemisphere 575.2
1987 Female, age 91, left hemisphere 315.0
2517 Female, age 94, left hemisphere 285.9
2514 Male, age 75, right hemisphere 280.6
2695 Female, age 67, right hemisphere 214.3
Basal amygdala
nTPM: 362.7
1955 Male, age 76, both hemispheres 409.7
2609 Male, age 75, right hemisphere 407.0
2243 Female, age 91, right hemisphere 394.4
2685 Female, age 94, left hemisphere 350.1
2110 Male, age 80, left hemisphere 321.5
2827 Female, age 67, right hemisphere 293.3
Central amygdala
nTPM: 370.6
1905 Male, age 76, both hemispheres 558.0
2826 Female, age 94, left hemisphere 379.5
2515 Male, age 75, right hemisphere 329.5
2239 Male, age 80, left hemisphere 298.1
2701 Female, age 91, right hemisphere 287.9
Corticomedial amygdala
nTPM: 376.8
2428 Male, age 75, right hemisphere 390.0
2429 Female, age 94, left hemisphere 387.0
2242 Female, age 91, right hemisphere 385.2
2829 Male, age 80, left hemisphere 375.6
2535 Female, age 67, right hemisphere 366.3
2240 Male, age 76, both hemispheres 356.9
Lateral amygdala
nTPM: 358.5
1883 Male, age 76, both hemispheres 587.6
2534 Female, age 94, left hemisphere 441.9
2516 Male, age 75, right hemisphere 373.8
2255 Female, age 91, right hemisphere 317.8
2256 Male, age 80, left hemisphere 248.3
2830 Female, age 67, right hemisphere 181.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 150.7
Samples: 152

Max nTPM: 342.4
Min nTPM: 6.2
Std nTPM: 67.7
Median nTPM: 138.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 342.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 336.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 306.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 301.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 288.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 286.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 284.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 282.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 269.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 267.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 256.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 255.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 253.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 251.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 241.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 238.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 236.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 232.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 230.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 229.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 227.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 227.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 226.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 223.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 220.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 219.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 215.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 213.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 212.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 211.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 210.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 210.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 210.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 208.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 206.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 205.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 204.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 204.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 201.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 199.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 196.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 196.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 194.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 193.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 191.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 190.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 190.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 187.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 187.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 181.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 175.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 175.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 172.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 171.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 171.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 166.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 165.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 164.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 164.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 163.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 162.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 160.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 159.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 156.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 147.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 146.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 146.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 145.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 143.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 143.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 143.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 142.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 140.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 139.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 139.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 139.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 138.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 138.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 136.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 136.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 135.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 135.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 130.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 130.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 129.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 129.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 128.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 127.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 126.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 125.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 125.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 124.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 122.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 122.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 120.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 120.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 119.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 115.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 115.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 113.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 112.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 112.4
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 111.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 110.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 109.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 109.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 108.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 107.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 106.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 106.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 104.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 102.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 99.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 98.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 96.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 96.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 94.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 94.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 93.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 90.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 89.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 89.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 88.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 86.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 86.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 86.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 83.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 82.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 81.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 81.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 80.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 78.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 77.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 76.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 76.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 76.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 74.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 70.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 70.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 70.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 69.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 69.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 68.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 63.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 57.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 56.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 43.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 41.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 35.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 30.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 30.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 6.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

378.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 378.4
FF:10151-102I7 76 years, female 378.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

269.9
Pig sample Sample description nTPM
Amygdala
nTPM: 270.0
Samples: 4

Max nTPM: 350.7
Min nTPM: 211.0
Sample A Female 350.7
Sample B Female 211.0
Sample C Male 214.0
Sample D Male 304.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1008.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 1008.2
Samples: 4

Max nTPM: 1056.2
Min nTPM: 977.4
Sample A Male 1056.2
Sample B Male 977.4
Sample C Female 1011.3
Sample D Female 987.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

27.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 27.6
69782109 Antisense, RP_050505_02_D01, Mouse strain C57BL/6J (56 days, male) 27.6

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