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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:233.8 nTPM
HPA Brain:137.3 nTPM
GTEx:233.8 nTPM
FANTOM5:189.7 Scaled Tags Per Million
Pig:37.5 nTPM
Mouse:218.5 nTPM
Allen mouse:0.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.3
Sample id Sample description nTPM
Amygdala
nTPM: 117.0
2814 Male, age 76, right hemisphere 172.0
2695 Female, age 67, right hemisphere 110.1
2517 Female, age 94, left hemisphere 104.5
1987 Female, age 91, left hemisphere 101.2
2514 Male, age 75, right hemisphere 97.3
Basal amygdala
nTPM: 129.4
2243 Female, age 91, right hemisphere 147.2
1955 Male, age 76, both hemispheres 139.7
2685 Female, age 94, left hemisphere 136.2
2609 Male, age 75, right hemisphere 123.9
2110 Male, age 80, left hemisphere 118.2
2827 Female, age 67, right hemisphere 111.4
Central amygdala
nTPM: 137.3
2826 Female, age 94, left hemisphere 157.8
1905 Male, age 76, both hemispheres 156.3
2701 Female, age 91, right hemisphere 133.4
2239 Male, age 80, left hemisphere 124.7
2515 Male, age 75, right hemisphere 114.5
Corticomedial amygdala
nTPM: 118.6
2242 Female, age 91, right hemisphere 155.9
2829 Male, age 80, left hemisphere 134.9
2240 Male, age 76, both hemispheres 118.5
2535 Female, age 67, right hemisphere 111.2
2429 Female, age 94, left hemisphere 99.0
2428 Male, age 75, right hemisphere 92.5
Lateral amygdala
nTPM: 124.1
1883 Male, age 76, both hemispheres 158.9
2534 Female, age 94, left hemisphere 143.2
2255 Female, age 91, right hemisphere 124.7
2830 Female, age 67, right hemisphere 109.5
2516 Male, age 75, right hemisphere 105.4
2256 Male, age 80, left hemisphere 102.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

233.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 233.8
Samples: 152

Max nTPM: 611.2
Min nTPM: 36.4
Std nTPM: 84.5
Median nTPM: 225.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 611.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 556.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 542.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 507.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 442.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 414.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 384.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 380.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 369.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 367.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 351.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 348.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 343.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 328.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 326.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 325.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 320.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 315.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 307.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 306.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 299.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 295.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 286.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 285.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 285.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 283.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 282.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 282.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 281.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 278.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 278.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 276.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 274.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 274.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 273.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 269.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 269.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 269.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 268.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 265.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 265.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 261.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 261.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 260.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 260.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 260.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 258.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 258.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 257.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 255.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 254.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 253.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 252.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 250.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 250.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 249.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 248.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 246.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 246.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 245.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 243.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 243.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 241.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 240.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 240.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 240.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 238.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 238.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 237.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 234.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 232.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 231.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 230.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 228.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 226.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 225.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 225.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 224.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 223.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 223.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 222.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 222.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 221.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 220.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 219.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 216.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 214.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 213.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 211.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 210.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 209.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 207.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 206.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 205.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 202.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 202.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 202.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 198.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 198.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 197.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 197.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 197.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 194.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 193.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 191.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 191.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 190.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 188.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 185.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 182.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 182.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 180.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 179.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 179.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 178.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 178.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 178.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 178.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 176.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 173.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 171.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 166.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 162.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 161.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 160.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 158.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 158.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 156.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 156.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 155.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 153.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 152.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 150.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 149.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 148.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 146.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 143.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 143.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 141.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 139.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 134.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 133.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 129.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 124.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 123.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 122.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 119.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 119.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 119.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 109.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 95.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 36.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

189.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 189.7
FF:10151-102I7 76 years, female 189.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.5
Pig sample Sample description nTPM
Amygdala
nTPM: 37.5
Samples: 4

Max nTPM: 58.8
Min nTPM: 26.4
Sample A Female 58.8
Sample B Female 28.9
Sample C Male 35.9
Sample D Male 26.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

218.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 218.5
Samples: 4

Max nTPM: 226.2
Min nTPM: 213.4
Sample A Male 214.1
Sample B Male 213.4
Sample C Female 226.2
Sample D Female 220.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
71529917 Antisense, RP_050915_01_C08, Mouse strain C57BL/6J (56 days, male) 0.3

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