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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
162.2
nTPM
FANTOM5:
226.0
Scaled Tags Per Million
Pig:
65.4
nTPM
Allen mouse:
0.5
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
162.2
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 103.0
2301
Female, age 85, both hemispheres
129.9
2188
Female, age 91, both hemispheres
106.8
1984
Male, age 76, both hemispheres
88.2
2090
Male, age 80, both hemispheres
87.3
Dorsal cochlear nucleus nTPM: 102.4
2802
Male, age 74, right hemisphere
117.2
2187
Female, age 91, both hemispheres
113.5
2370
Male, age 61, both hemispheres
102.9
2058
Male, age 76, both hemispheres
96.2
2378
Male, age 80, both hemispheres
82.2
Dorsal tegmental nucleus nTPM: 103.0
2083
Male, age 80, both hemispheres
112.0
2326
Male, age 74, both hemispheres
101.2
1936
Male, age 76, left hemisphere
99.5
2358
Male, age 61, both hemispheres
99.1
Dorsolateral tegmental area nTPM: 104.9
2751
Female, age 85, both hemispheres
120.6
2654
Male, age 80, both hemispheres
109.8
2141
Male, age 76, both hemispheres
106.9
2337
Male, age 61, both hemispheres
95.9
2360
Male, age 74, both hemispheres
91.1
Kolliker-Fuse nucleus nTPM: 113.7
2793
Female, age 91, left hemisphere
134.5
2163
Male, age 80, both hemispheres
115.1
2315
Male, age 76, right hemisphere
91.4
Lateral lemniscal nuclei nTPM: 141.3
2169
Male, age 76, both hemispheres
179.3
2036
Male, age 80, both hemispheres
173.1
2746
Female, age 85, left hemisphere
124.4
2453
Male, age 74, right hemisphere
121.9
2320
Female, age 91, left hemisphere
107.7
Lateral parabrachial nucleus nTPM: 113.6
2139
Female, age 85, right hemisphere
134.0
2790
Male, age 61, both hemispheres
115.6
2013
Male, age 80, both hemispheres
110.0
2792
Male, age 76, both hemispheres
94.9
Lateral vestibular nucleus nTPM: 115.5
2311
Male, age 80, both hemispheres
115.7
2184
Male, age 76, both hemispheres
115.3
Locus coeruleus nTPM: 162.2
2720
Male, age 74, both hemispheres
203.5
2014
Male, age 55, unknown
173.0
2123
Female, age 91, both hemispheres
168.7
2788
Male, age 74, unknown
153.5
2317
Female, age 72, unknown
152.4
2162
Male, age 80, both hemispheres
142.3
1980
Male, age 76, both hemispheres
141.9
Medial parabrachial nucleus nTPM: 123.5
2170
Female, age 91, both hemispheres
144.4
2854
Male, age 80, both hemispheres
142.5
2156
Male, age 61, both hemispheres
117.0
2786
Male, age 76, both hemispheres
108.4
2463
Female, age 85, right hemisphere
105.2
Medial periolivary nuclei nTPM: 130.2
2171
Female, age 85, both hemispheres
183.0
2063
Male, age 76, both hemispheres
162.8
2791
Male, age 74, right hemisphere
120.5
2458
Female, age 91, both hemispheres
98.8
2081
Male, age 80, both hemispheres
85.8
Motor facial nucleus nTPM: 135.3
2062
Male, age 76, both hemispheres
172.4
2697
Female, age 85, both hemispheres
157.4
2327
Male, age 80, both hemispheres
141.0
2365
Male, age 74, right hemisphere
121.5
2795
Female, age 91, both hemispheres
118.3
2126
Male, age 61, both hemispheres
101.4
Motor trigeminal nucleus nTPM: 116.8
2335
Male, age 61, both hemispheres
126.0
2079
Male, age 80, both hemispheres
125.3
2560
Male, age 74, both hemispheres
120.4
2309
Male, age 76, both hemispheres
108.6
2321
Female, age 91, both hemispheres
103.5
Nuclei of the trapezoid body nTPM: 150.5
2159
Male, age 61, both hemispheres
201.0
1983
Male, age 76, both hemispheres
162.9
2735
Female, age 85, both hemispheres
156.3
2166
Male, age 80, both hemispheres
128.6
2368
Female, age 91, both hemispheres
103.5
Nucleus raphe magnus nTPM: 150.3
2160
Male, age 61, both hemispheres
194.9
2172
Female, age 85, both hemispheres
188.9
2051
Male, age 76, both hemispheres
155.3
2328
Male, age 80, both hemispheres
138.7
2455
Male, age 74, both hemispheres
128.9
2459
Female, age 91, both hemispheres
95.0
Paramedian reticular nucleus nTPM: 124.2
2050
Female, age 85, both hemispheres
166.6
2313
Male, age 61, both hemispheres
143.5
2057
Male, age 80, both hemispheres
112.4
2052
Male, age 76, both hemispheres
74.3
Pedunculopontine tegmental nucleus nTPM: 113.2
2334
Male, age 80, both hemispheres
120.2
1921
Female, age 85, both hemispheres
115.8
2338
Male, age 61, both hemispheres
103.7
Pontine nuclei nTPM: 137.6
2787
Female, age 85, both hemispheres
195.9
1863
Male, age 55, unknown
161.1
1968
Male, age 76, left hemisphere
156.7
2727
Male, age 61, right hemisphere
135.1
2109
Female, age 72, unknown
132.8
2454
Male, age 74, left hemisphere
109.0
2115
Male, age 80, left hemisphere
108.7
2319
Female, age 91, both hemispheres
101.8
Pontine raphe nucleus nTPM: 146.7
2853
Male, age 76, midline
151.8
2122
Female, age 85, midline
141.7
Posteroventral cochlear nucleus nTPM: 92.1
2752
Female, age 85, both hemispheres
116.2
2371
Male, age 61, both hemispheres
98.2
2070
Male, age 76, both hemispheres
84.6
2341
Male, age 80, both hemispheres
83.2
2135
Female, age 91, both hemispheres
78.1
Principal sensory trigeminal nucleus nTPM: 132.7
2158
Male, age 61, both hemispheres
183.4
2008
Male, age 80, left hemisphere
142.3
2324
Male, age 76, both hemispheres
109.2
2367
Female, age 91, left hemisphere
96.0
Reticular pontine nucleus, caudal nTPM: 125.7
2332
Male, age 80, right hemisphere
165.6
2092
Male, age 76, both hemispheres
142.3
2559
Male, age 74, both hemispheres
102.7
2457
Female, age 91, both hemispheres
92.1
Reticular pontine nucleus, oral nTPM: 124.4
2167
Male, age 76, both hemispheres
132.4
2012
Female, age 85, both hemispheres
129.3
1939
Male, age 80, both hemispheres
127.3
2361
Male, age 74, both hemispheres
126.4
2366
Female, age 91, both hemispheres
106.5
Reticulotegmental nucleus nTPM: 126.1
2325
Male, age 76, both hemispheres
162.4
2452
Male, age 74, both hemispheres
118.1
2322
Female, age 91, both hemispheres
112.5
2333
Male, age 80, both hemispheres
111.3
Spinal trigeminal nucleus, oral nTPM: 106.8
2164
Male, age 80, both hemispheres
115.3
2737
Female, age 85, both hemispheres
111.6
1978
Male, age 76, both hemispheres
93.6
Subcoeruleus area nTPM: 119.2
2089
Male, age 76, left hemisphere
130.7
1958
Male, age 80, both hemispheres
127.9
2323
Female, age 91, left hemisphere
126.4
2451
Male, age 74, both hemispheres
111.0
2369
Female, age 85, left hemisphere
99.9
Superior olive nTPM: 125.1
1875
Female, age 85, both hemispheres
143.8
2020
Male, age 76, both hemispheres
133.9
2329
Male, age 80, right hemisphere
124.3
2364
Male, age 74, right hemisphere
112.6
2561
Female, age 91, both hemispheres
111.1
Ventral periolivary nuclei nTPM: 135.2
2165
Male, age 80, both hemispheres
159.9
2130
Female, age 85, both hemispheres
157.4
2794
Female, age 91, left hemisphere
111.8
2023
Male, age 76, both hemispheres
111.7
Ventrolateral tegmental area, A5 NE cell group nTPM: 124.4
2840
Female, age 85, both hemispheres
152.7
1959
Male, age 76, both hemispheres
144.3
2161
Male, age 80, both hemispheres
123.6
2449
Male, age 74, both hemispheres
122.0
2359
Male, age 61, both hemispheres
112.9
2456
Female, age 91, both hemispheres
90.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
65.4
Pig sample
Sample description
nTPM
Pons nTPM: 65.4
Samples: 4
Max nTPM: 91.8
Min nTPM: 33.7
Sample A
Female
91.8
Sample B
Female
33.7
Sample C
Male
51.1
Sample D
Male
85.0
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
