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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

98.295
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:36.7 nTPM
HPA Brain:73.7 nTPM
GTEx:36.7 nTPM
FANTOM5:69.7 Scaled Tags Per Million
Pig:63.6 nTPM
Mouse:78.7 nTPM
Allen mouse:14.1 Expression energy

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA017960
Amygdala mean intensity 98.295
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the lateral olfactory tract 70.317
Basal medial amygdaloid nucleus 80.020
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 51.359
Cortical amygdala 98.295
Central amygdala 89.463
Medial amygdaloid nucleus 90.332

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.7
Sample id Sample description nTPM
Amygdala
nTPM: 73.7
2814 Male, age 76, right hemisphere 113.7
2695 Female, age 67, right hemisphere 83.0
1987 Female, age 91, left hemisphere 58.6
2514 Male, age 75, right hemisphere 56.9
2517 Female, age 94, left hemisphere 56.5
Basal amygdala
nTPM: 65.4
1955 Male, age 76, both hemispheres 86.8
2110 Male, age 80, left hemisphere 74.0
2685 Female, age 94, left hemisphere 66.6
2243 Female, age 91, right hemisphere 61.3
2827 Female, age 67, right hemisphere 53.9
2609 Male, age 75, right hemisphere 49.8
Central amygdala
nTPM: 66.9
1905 Male, age 76, both hemispheres 105.1
2239 Male, age 80, left hemisphere 64.3
2826 Female, age 94, left hemisphere 61.3
2701 Female, age 91, right hemisphere 54.1
2515 Male, age 75, right hemisphere 49.7
Corticomedial amygdala
nTPM: 57.0
2240 Male, age 76, both hemispheres 72.4
2829 Male, age 80, left hemisphere 65.4
2429 Female, age 94, left hemisphere 58.8
2242 Female, age 91, right hemisphere 52.4
2535 Female, age 67, right hemisphere 48.6
2428 Male, age 75, right hemisphere 44.5
Lateral amygdala
nTPM: 66.5
1883 Male, age 76, both hemispheres 95.9
2534 Female, age 94, left hemisphere 75.3
2256 Male, age 80, left hemisphere 73.3
2255 Female, age 91, right hemisphere 55.2
2830 Female, age 67, right hemisphere 52.4
2516 Male, age 75, right hemisphere 46.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

36.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 36.7
Samples: 152

Max nTPM: 62.3
Min nTPM: 5.5
Std nTPM: 9.0
Median nTPM: 36.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 62.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 62.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 60.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 58.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 57.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 56.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 54.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 53.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 53.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 52.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 52.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 51.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 48.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 48.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 48.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 48.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 47.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 47.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 47.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 46.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 45.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 45.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 45.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 44.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 44.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 44.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 44.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 44.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 43.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 43.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 43.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 43.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 42.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 42.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 42.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 42.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 41.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 41.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 41.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 41.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 41.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 40.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 40.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 40.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 40.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 40.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 40.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 40.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 40.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 39.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 39.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 39.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 39.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 39.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 39.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 39.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 38.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 38.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 38.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 38.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 38.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 38.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 38.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 38.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 38.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 37.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 37.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 37.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 37.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 37.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 36.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 36.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 36.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 36.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 36.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 36.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 36.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 36.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 36.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 36.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 36.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 36.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 35.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 35.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 35.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 35.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 34.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 34.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 34.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 34.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 34.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 34.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 34.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 34.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 34.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 33.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 33.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 33.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 33.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 33.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 33.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 32.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 32.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 32.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 32.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 32.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 31.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 31.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 31.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 31.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 31.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 30.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 30.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 30.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 30.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 29.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 29.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 29.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 29.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 29.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 29.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 28.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 28.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 28.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 28.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 28.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 28.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 28.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 27.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 27.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 27.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 27.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 27.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 26.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 26.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 26.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 26.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 26.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 26.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 25.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 25.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 25.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 24.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 24.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 23.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 22.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 22.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 22.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 19.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 19.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 18.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 5.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

69.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 69.7
FF:10151-102I7 76 years, female 69.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63.6
Pig sample Sample description nTPM
Amygdala
nTPM: 63.6
Samples: 4

Max nTPM: 82.4
Min nTPM: 52.5
Sample A Female 82.4
Sample B Female 52.5
Sample C Male 62.3
Sample D Male 57.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 78.7
Samples: 4

Max nTPM: 89.1
Min nTPM: 71.8
Sample A Male 76.4
Sample B Male 77.4
Sample C Female 89.1
Sample D Female 71.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

14.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.1
68845275 Antisense, RP_050224_01_E01, Mouse strain C57BL/6J (56 days, male) 15.2
72077454 Antisense, RP_051017_03_A08, Mouse strain C57BL/6J (56 days, male) 13.0

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