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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
73.7
Sample id
Sample description
nTPM
Amygdala nTPM: 73.7
2814
Male, age 76, right hemisphere
113.7
2695
Female, age 67, right hemisphere
83.0
1987
Female, age 91, left hemisphere
58.6
2514
Male, age 75, right hemisphere
56.9
2517
Female, age 94, left hemisphere
56.5
Basal amygdala nTPM: 65.4
1955
Male, age 76, both hemispheres
86.8
2110
Male, age 80, left hemisphere
74.0
2685
Female, age 94, left hemisphere
66.6
2243
Female, age 91, right hemisphere
61.3
2827
Female, age 67, right hemisphere
53.9
2609
Male, age 75, right hemisphere
49.8
Central amygdala nTPM: 66.9
1905
Male, age 76, both hemispheres
105.1
2239
Male, age 80, left hemisphere
64.3
2826
Female, age 94, left hemisphere
61.3
2701
Female, age 91, right hemisphere
54.1
2515
Male, age 75, right hemisphere
49.7
Corticomedial amygdala nTPM: 57.0
2240
Male, age 76, both hemispheres
72.4
2829
Male, age 80, left hemisphere
65.4
2429
Female, age 94, left hemisphere
58.8
2242
Female, age 91, right hemisphere
52.4
2535
Female, age 67, right hemisphere
48.6
2428
Male, age 75, right hemisphere
44.5
Lateral amygdala nTPM: 66.5
1883
Male, age 76, both hemispheres
95.9
2534
Female, age 94, left hemisphere
75.3
2256
Male, age 80, left hemisphere
73.3
2255
Female, age 91, right hemisphere
55.2
2830
Female, age 67, right hemisphere
52.4
2516
Male, age 75, right hemisphere
46.9
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
36.7
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 36.7
Samples: 152
Max nTPM: 62.3
Min nTPM: 5.5
Std nTPM: 9.0
Median nTPM: 36.6
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
62.3
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
62.2
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
60.3
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
58.6
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
57.6
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
56.3
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
54.8
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
53.9
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
53.1
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
52.3
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
52.3
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
51.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
48.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
48.2
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
48.1
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
48.0
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
47.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
47.3
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
47.1
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
46.5
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
45.8
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
45.6
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
45.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
44.9
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
44.8
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
44.2
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
44.2
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
44.1
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
43.9
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
43.3
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
43.2
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
43.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
42.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
42.2
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
42.1
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
42.1
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
41.9
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
41.8
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
41.2
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
41.2
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
41.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
40.9
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
40.9
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
40.4
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
40.4
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
40.3
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
40.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
40.2
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
40.1
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
39.8
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
39.7
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
39.5
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
39.3
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
39.3
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
39.2
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
39.1
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
38.9
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
38.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
38.7
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
38.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
38.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
38.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
38.1
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
38.1
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
38.0
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
37.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
37.9
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
37.8
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
37.6
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
37.6
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
36.9
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
36.9
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
36.8
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
36.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
36.7
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
36.6
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
36.5
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
36.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
36.5
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
36.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
36.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
36.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
35.6
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
35.2
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
35.2
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
35.1
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
34.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
34.7
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
34.6
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
34.4
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
34.2
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
34.2
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
34.2
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
34.1
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
34.0
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
33.9
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
33.8
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
33.8
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
33.7
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
33.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
33.5
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
32.8
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
32.3
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
32.1
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
32.1
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
32.0
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
31.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
31.7
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
31.6
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
31.6
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
31.2
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
30.7
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
30.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
30.4
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
30.2
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
29.8
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
29.6
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
29.6
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
29.6
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
29.3
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
29.0
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
28.9
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
28.9
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
28.7
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
28.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
28.4
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
28.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
28.1
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
27.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
27.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
27.6
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
27.5
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
27.2
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
26.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
26.8
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
26.4
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
26.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
26.1
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
26.0
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
25.2
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
25.0
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
25.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
24.1
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
24.0
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
23.7
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
22.8
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
22.6
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
22.4
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
19.9
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
19.6
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
18.6
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
5.5
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
78.7
Mouse sample
Sample description
nTPM
Amygdala nTPM: 78.7
Samples: 4
Max nTPM: 89.1
Min nTPM: 71.8
Sample A
Male
76.4
Sample B
Male
77.4
Sample C
Female
89.1
Sample D
Female
71.8
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.