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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
102.7
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 102.7
2301
Female, age 85, both hemispheres
124.4
2188
Female, age 91, both hemispheres
103.7
2090
Male, age 80, both hemispheres
96.8
1984
Male, age 76, both hemispheres
86.0
Dorsal cochlear nucleus nTPM: 88.5
2187
Female, age 91, both hemispheres
104.3
2802
Male, age 74, right hemisphere
99.1
2058
Male, age 76, both hemispheres
85.5
2378
Male, age 80, both hemispheres
79.6
2370
Male, age 61, both hemispheres
73.9
Dorsal tegmental nucleus nTPM: 80.5
2326
Male, age 74, both hemispheres
89.8
2083
Male, age 80, both hemispheres
85.9
1936
Male, age 76, left hemisphere
76.4
2358
Male, age 61, both hemispheres
70.1
Dorsolateral tegmental area nTPM: 82.4
2751
Female, age 85, both hemispheres
98.3
2360
Male, age 74, both hemispheres
89.1
2654
Male, age 80, both hemispheres
82.8
2337
Male, age 61, both hemispheres
73.6
2141
Male, age 76, both hemispheres
68.3
Kolliker-Fuse nucleus nTPM: 86.1
2793
Female, age 91, left hemisphere
114.7
2163
Male, age 80, both hemispheres
81.6
2315
Male, age 76, right hemisphere
62.1
Lateral lemniscal nuclei nTPM: 86.5
2320
Female, age 91, left hemisphere
98.4
2453
Male, age 74, right hemisphere
86.5
2036
Male, age 80, both hemispheres
85.6
2746
Female, age 85, left hemisphere
84.7
2169
Male, age 76, both hemispheres
77.2
Lateral parabrachial nucleus nTPM: 80.4
2792
Male, age 76, both hemispheres
91.6
2013
Male, age 80, both hemispheres
83.9
2790
Male, age 61, both hemispheres
76.6
2139
Female, age 85, right hemisphere
69.5
Lateral vestibular nucleus nTPM: 92.5
2184
Male, age 76, both hemispheres
93.2
2311
Male, age 80, both hemispheres
91.7
Locus coeruleus nTPM: 64.2
2720
Male, age 74, both hemispheres
78.0
1980
Male, age 76, both hemispheres
67.0
2123
Female, age 91, both hemispheres
64.7
2317
Female, age 72, unknown
60.6
2014
Male, age 55, unknown
60.3
2162
Male, age 80, both hemispheres
60.3
2788
Male, age 74, unknown
58.1
Medial parabrachial nucleus nTPM: 92.5
2170
Female, age 91, both hemispheres
113.8
2463
Female, age 85, right hemisphere
98.2
2854
Male, age 80, both hemispheres
91.1
2786
Male, age 76, both hemispheres
85.2
2156
Male, age 61, both hemispheres
74.4
Medial periolivary nuclei nTPM: 81.5
2458
Female, age 91, both hemispheres
95.1
2081
Male, age 80, both hemispheres
90.6
2791
Male, age 74, right hemisphere
82.8
2171
Female, age 85, both hemispheres
72.7
2063
Male, age 76, both hemispheres
66.0
Motor facial nucleus nTPM: 81.9
2365
Male, age 74, right hemisphere
90.2
2126
Male, age 61, both hemispheres
89.6
2697
Female, age 85, both hemispheres
87.6
2795
Female, age 91, both hemispheres
81.5
2327
Male, age 80, both hemispheres
76.1
2062
Male, age 76, both hemispheres
66.5
Motor trigeminal nucleus nTPM: 85.0
2321
Female, age 91, both hemispheres
104.9
2560
Male, age 74, both hemispheres
98.4
2309
Male, age 76, both hemispheres
81.0
2079
Male, age 80, both hemispheres
74.6
2335
Male, age 61, both hemispheres
66.3
Nuclei of the trapezoid body nTPM: 74.8
2368
Female, age 91, both hemispheres
87.2
2166
Male, age 80, both hemispheres
86.1
2159
Male, age 61, both hemispheres
68.9
2735
Female, age 85, both hemispheres
66.2
1983
Male, age 76, both hemispheres
65.6
Nucleus raphe magnus nTPM: 75.1
2459
Female, age 91, both hemispheres
94.4
2328
Male, age 80, both hemispheres
81.5
2051
Male, age 76, both hemispheres
81.4
2455
Male, age 74, both hemispheres
77.5
2172
Female, age 85, both hemispheres
65.0
2160
Male, age 61, both hemispheres
51.2
Paramedian reticular nucleus nTPM: 74.8
2057
Male, age 80, both hemispheres
80.6
2050
Female, age 85, both hemispheres
79.9
2052
Male, age 76, both hemispheres
73.9
2313
Male, age 61, both hemispheres
64.9
Pedunculopontine tegmental nucleus nTPM: 70.7
2334
Male, age 80, both hemispheres
73.8
1921
Female, age 85, both hemispheres
72.4
2338
Male, age 61, both hemispheres
65.7
Pontine nuclei nTPM: 86.0
2454
Male, age 74, left hemisphere
105.7
2319
Female, age 91, both hemispheres
101.9
2109
Female, age 72, unknown
92.7
1863
Male, age 55, unknown
92.2
2115
Male, age 80, left hemisphere
88.5
1968
Male, age 76, left hemisphere
75.0
2787
Female, age 85, both hemispheres
74.3
2727
Male, age 61, right hemisphere
57.5
Pontine raphe nucleus nTPM: 68.4
2853
Male, age 76, midline
69.1
2122
Female, age 85, midline
67.7
Posteroventral cochlear nucleus nTPM: 86.4
2135
Female, age 91, both hemispheres
111.2
2341
Male, age 80, both hemispheres
101.7
2070
Male, age 76, both hemispheres
79.8
2371
Male, age 61, both hemispheres
76.2
2752
Female, age 85, both hemispheres
63.1
Principal sensory trigeminal nucleus nTPM: 82.2
2367
Female, age 91, left hemisphere
108.8
2324
Male, age 76, both hemispheres
92.5
2008
Male, age 80, left hemisphere
71.8
2158
Male, age 61, both hemispheres
55.6
Reticular pontine nucleus, caudal nTPM: 89.4
2559
Male, age 74, both hemispheres
110.1
2457
Female, age 91, both hemispheres
94.3
2332
Male, age 80, right hemisphere
77.3
2092
Male, age 76, both hemispheres
75.9
Reticular pontine nucleus, oral nTPM: 90.5
2361
Male, age 74, both hemispheres
103.8
2366
Female, age 91, both hemispheres
97.7
2167
Male, age 76, both hemispheres
84.6
1939
Male, age 80, both hemispheres
83.6
2012
Female, age 85, both hemispheres
82.9
Reticulotegmental nucleus nTPM: 82.3
2322
Female, age 91, both hemispheres
97.5
2452
Male, age 74, both hemispheres
86.7
2333
Male, age 80, both hemispheres
78.6
2325
Male, age 76, both hemispheres
66.6
Spinal trigeminal nucleus, oral nTPM: 80.9
2164
Male, age 80, both hemispheres
90.0
1978
Male, age 76, both hemispheres
80.5
2737
Female, age 85, both hemispheres
72.1
Subcoeruleus area nTPM: 78.2
2369
Female, age 85, left hemisphere
106.0
2089
Male, age 76, left hemisphere
75.6
1958
Male, age 80, both hemispheres
72.2
2451
Male, age 74, both hemispheres
71.4
2323
Female, age 91, left hemisphere
65.9
Superior olive nTPM: 85.6
2561
Female, age 91, both hemispheres
94.5
2329
Male, age 80, right hemisphere
93.2
2364
Male, age 74, right hemisphere
88.0
2020
Male, age 76, both hemispheres
79.8
1875
Female, age 85, both hemispheres
72.6
Ventral periolivary nuclei nTPM: 76.0
2794
Female, age 91, left hemisphere
78.0
2023
Male, age 76, both hemispheres
77.6
2165
Male, age 80, both hemispheres
75.0
2130
Female, age 85, both hemispheres
73.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 82.4
2456
Female, age 91, both hemispheres
98.2
2840
Female, age 85, both hemispheres
93.6
2449
Male, age 74, both hemispheres
84.3
2161
Male, age 80, both hemispheres
78.6
1959
Male, age 76, both hemispheres
70.6
2359
Male, age 61, both hemispheres
69.2
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
99.1
Pig sample
Sample description
nTPM
Pons nTPM: 99.1
Samples: 4
Max nTPM: 134.2
Min nTPM: 73.4
Sample A
Female
134.2
Sample B
Female
75.3
Sample C
Male
73.4
Sample D
Male
113.5
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
