MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:93.2 nTPM
HPA Brain:108.4 nTPM
GTEx:93.2 nTPM
FANTOM5:377.8 Scaled Tags Per Million
Pig:57.4 nTPM
Mouse:440.0 nTPM
Allen mouse:13.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 108.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.2
2411 Female, age 72, unknown 113.5
2019 Male, age 18, unknown 109.1
1833 Male, age 53, unknown 103.6
1830 Male, age 51, unknown 97.8
1870 Female, age 42, unknown 96.0
2828 Female, age 72, unknown 83.7
2219 Male, age 76, both hemispheres 79.8
1827 Male, age 72, unknown 70.2
2666 Male, age 74, left hemisphere 56.3
2586 Male, age 75, left hemisphere 41.7
Dorsal raphe nucleus
nTPM: 63.0
2016 Female, age 72, unknown 74.8
2750 Male, age 76, both hemispheres 70.8
1828 Male, age 53, unknown 69.8
2298 Female, age 72, unknown 56.6
2047 Male, age 72, unknown 42.8
Inferior colliculus
nTPM: 68.9
2097 Female, age 72, unknown 80.4
1890 Male, age 53, unknown 68.0
1848 Female, age 42, unknown 67.9
2849 Male, age 72, unknown 59.2
Median raphe nucleus
nTPM: 44.7
2220 Male, age 76, midline 44.7
Periaquaductal grey, anterior
nTPM: 50.8
2502 Female, age 75, unknown 64.4
1947 Male, age 18, unknown 54.9
1795 Male, age 51, unknown 33.1
Periaquaductal grey, dorsal
nTPM: 48.6
2464 Female, age 72, unknown 75.4
1831 Male, age 72, unknown 44.2
2850 Male, age 76, both hemispheres 41.3
1840 Male, age 53, unknown 33.4
Periaquaductal grey, lateral
nTPM: 48.3
2272 Male, age 74, both hemispheres 52.7
2053 Male, age 18, unknown 46.5
2140 Male, age 76, both hemispheres 45.6
Pretectal area
nTPM: 64.8
1815 Male, age 53, unknown 89.9
1817 Female, age 42, unknown 88.4
2007 Male, age 72, unknown 77.9
2316 Male, age 76, right hemisphere 75.8
2667 Female, age 75, unknown 65.4
2273 Male, age 74, both hemispheres 55.9
2825 Male, age 18, unknown 53.5
2407 Male, age 75, both hemispheres 53.2
2224 Female, age 72, unknown 51.8
1816 Male, age 51, unknown 50.6
1944 Female, age 72, unknown 50.5
Red nucleus
nTPM: 108.4
1821 Female, age 72, unknown 179.9
1904 Male, age 53, unknown 135.5
1865 Male, age 51, unknown 128.9
1954 Female, age 42, unknown 119.8
2785 Male, age 18, unknown 118.1
2769 Male, age 72, unknown 115.3
2503 Female, age 72, unknown 112.7
2227 Male, age 72, unknown 106.9
2823 Male, age 76, right hemisphere 104.2
2725 Female, age 75, unknown 72.1
2588 Male, age 74, left hemisphere 67.5
2584 Male, age 75, left hemisphere 40.2
Substantia nigra
nTPM: 67.5
2409 Female, age 72, unknown 102.6
1889 Female, age 72, unknown 87.1
1851 Male, age 51, unknown 77.5
2241 Male, age 72, unknown 74.1
2699 Male, age 18, unknown 61.0
2590 Female, age 75, unknown 60.4
1916 Female, age 42, unknown 59.1
1941 Male, age 53, unknown 58.8
2583 Male, age 75, right hemisphere 58.3
2665 Male, age 74, both hemispheres 36.3
Superior colliculus
nTPM: 72.1
2587 Male, age 74, left hemisphere 93.5
1895 Male, age 76, right hemisphere 93.3
1913 Female, age 42, unknown 91.0
1995 Male, age 72, unknown 84.6
1839 Male, age 51, unknown 78.7
2668 Female, age 75, unknown 77.7
1796 Male, age 53, unknown 59.4
2087 Female, age 72, unknown 58.4
2261 Male, age 18, unknown 52.0
2664 Male, age 75, both hemispheres 32.8
Ventral tegmental area
nTPM: 65.4
2410 Female, age 72, unknown 101.2
1915 Female, age 42, unknown 66.1
2218 Male, age 76, both hemispheres 63.3
2223 Female, age 72, unknown 63.1
1942 Male, age 51, unknown 56.6
2021 Male, age 53, unknown 41.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 93.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 93.2
Samples: 139

Max nTPM: 589.9
Min nTPM: 31.5
Std nTPM: 58.8
Median nTPM: 78.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 589.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 298.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 236.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 209.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 197.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 195.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 195.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 182.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 174.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 167.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 161.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 377.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 377.8
FF:10158-103A5 76 years, female 377.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 57.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.2
Samples: 4

Max nTPM: 41.7
Min nTPM: 28.8
Sample A Female 40.5
Sample B Female 41.7
Sample C Male 33.6
Sample D Male 28.8
Midbrain
nTPM: 45.9
Samples: 4

Max nTPM: 84.5
Min nTPM: 19.9
Sample A Female 19.9
Sample B Female 84.5
Sample C Male 33.7
Sample D Male 45.6
Periaqueductal gray
nTPM: 51.4
Samples: 3

Max nTPM: 72.8
Min nTPM: 33.8
Sample B Female 72.8
Sample C Male 47.5
Sample D Male 33.8
Superior colliculi
nTPM: 57.4
Samples: 4

Max nTPM: 82.7
Min nTPM: 40.3
Sample A Female 65.1
Sample B Female 82.7
Sample C Male 41.5
Sample D Male 40.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 440.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 440.0
Samples: 4

Max nTPM: 452.7
Min nTPM: 426.9
Sample A Male 452.7
Sample B Male 451.7
Sample C Female 426.9
Sample D Female 428.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.6
72103831 Antisense, RP_051017_03_D11, Mouse strain C57BL/6J (56 days, male) 15.2
69014434 Antisense, RP_050310_01_B02, Mouse strain C57BL/6J (56 days, male) 11.9

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