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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:116.9 nTPM
HPA Brain:34.6 nTPM
GTEx:116.9 nTPM
FANTOM5:130.1 Scaled Tags Per Million
Pig:82.7 nTPM
Mouse:108.8 nTPM
Allen mouse:13.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.6
Sample id Sample description nTPM
Amygdala
nTPM: 34.6
2514 Male, age 75, right hemisphere 39.6
2695 Female, age 67, right hemisphere 38.2
1987 Female, age 91, left hemisphere 37.4
2814 Male, age 76, right hemisphere 34.0
2517 Female, age 94, left hemisphere 24.0
Basal amygdala
nTPM: 27.4
2609 Male, age 75, right hemisphere 32.7
2243 Female, age 91, right hemisphere 30.3
2685 Female, age 94, left hemisphere 28.9
1955 Male, age 76, both hemispheres 27.5
2827 Female, age 67, right hemisphere 24.0
2110 Male, age 80, left hemisphere 21.0
Central amygdala
nTPM: 28.1
1905 Male, age 76, both hemispheres 31.8
2701 Female, age 91, right hemisphere 27.8
2515 Male, age 75, right hemisphere 27.5
2826 Female, age 94, left hemisphere 27.3
2239 Male, age 80, left hemisphere 25.9
Corticomedial amygdala
nTPM: 31.8
2242 Female, age 91, right hemisphere 39.8
2829 Male, age 80, left hemisphere 35.6
2428 Male, age 75, right hemisphere 31.5
2240 Male, age 76, both hemispheres 30.8
2429 Female, age 94, left hemisphere 29.3
2535 Female, age 67, right hemisphere 23.6
Lateral amygdala
nTPM: 27.8
2516 Male, age 75, right hemisphere 32.6
2830 Female, age 67, right hemisphere 29.6
1883 Male, age 76, both hemispheres 28.8
2534 Female, age 94, left hemisphere 27.7
2255 Female, age 91, right hemisphere 25.3
2256 Male, age 80, left hemisphere 22.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

116.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 116.9
Samples: 152

Max nTPM: 291.9
Min nTPM: 63.9
Std nTPM: 37.3
Median nTPM: 110.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 291.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 279.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 267.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 249.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 225.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 198.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 188.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 187.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 183.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 180.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 175.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 167.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 161.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 161.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 160.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 152.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 152.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 145.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 145.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 144.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 143.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 142.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 141.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 141.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 138.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 137.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 137.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 136.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 135.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 134.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 133.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 131.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 130.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 128.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 128.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 128.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 127.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 125.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 124.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 124.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 124.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 123.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 123.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 122.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 121.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 121.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 120.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 120.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 120.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 119.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 118.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 118.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 118.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 118.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 117.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 117.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 116.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 116.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 116.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 115.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 115.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 115.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 114.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 114.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 114.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 114.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 114.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 114.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 113.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 112.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 112.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 112.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 111.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 111.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 110.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 110.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 110.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 109.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 109.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 109.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 109.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 109.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 108.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 108.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 107.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 107.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 107.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 107.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 106.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 106.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 106.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 106.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 106.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 104.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 104.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 104.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 103.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 102.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 101.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 101.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 101.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 100.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 100.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 99.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 99.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 98.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 98.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 98.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 96.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 96.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 95.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 95.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 95.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 94.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 94.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 93.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 93.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 92.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 92.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 92.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 90.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 90.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 90.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 89.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 89.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 89.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 88.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 87.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 84.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 84.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 83.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 83.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 83.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 83.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 82.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 82.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 82.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 82.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 81.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 81.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 78.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 77.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 76.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 76.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 75.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 74.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 73.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 73.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 72.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 72.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 66.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 63.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

130.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 130.1
FF:10151-102I7 76 years, female 130.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.7
Pig sample Sample description nTPM
Amygdala
nTPM: 82.7
Samples: 4

Max nTPM: 100.6
Min nTPM: 61.2
Sample A Female 100.6
Sample B Female 98.5
Sample C Male 70.4
Sample D Male 61.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 108.8
Samples: 4

Max nTPM: 114.0
Min nTPM: 99.9
Sample A Male 114.0
Sample B Male 112.3
Sample C Female 99.9
Sample D Female 109.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.4
68545201 Antisense, RP_050118_03_B01, Mouse strain C57BL/6J (56 days, male) 13.4

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