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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:142.2 nTPM
HPA Brain:39.7 nTPM
GTEx:142.2 nTPM
FANTOM5:205.4 Scaled Tags Per Million
Pig:160.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 35.2
1981 Female, age 72, midline 44.3
2048 Male, age 55, midline 35.3
2194 Female, age 79, both hemispheres 32.7
2816 Male, age 47, midline 32.2
2565 Male, age 75, midline 31.9
Cervical spinal cord, dorsal horn
nTPM: 39.7
2173 Female, age 72, unknown 48.2
2296 Male, age 66, both hemispheres 44.2
2069 Male, age 47, both hemispheres 41.2
1877 Male, age 55, unknown 36.6
2721 Male, age 90, both hemispheres 36.4
2297 Male, age 75, both hemispheres 31.8
Cervical spinal cord, ventral horn
nTPM: 39.7
2098 Female, age 72, unknown 53.4
2480 Male, age 75, both hemispheres 43.7
2295 Male, age 66, both hemispheres 43.1
2809 Male, age 90, both hemispheres 40.5
2068 Male, age 55, unknown 29.5
2820 Female, age 79, both hemispheres 27.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

142.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 142.2
Samples: 159

Max nTPM: 291.1
Min nTPM: 68.0
Std nTPM: 35.8
Median nTPM: 137.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 291.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 268.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 234.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 231.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 227.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 217.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 212.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 212.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 210.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 210.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 205.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 203.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 202.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 195.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 192.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 192.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 190.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 187.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 181.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 180.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 178.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 178.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 177.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 174.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 173.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 173.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 171.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 168.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 167.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 167.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 165.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 165.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 163.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 162.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 162.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 162.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 160.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 159.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 159.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 158.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 158.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 156.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 156.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 156.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 156.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 155.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 155.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 155.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 155.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 153.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 152.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 152.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 151.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 149.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 149.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 149.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 147.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 147.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 147.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 146.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 146.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 145.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 145.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 144.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 144.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 143.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 143.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 143.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 143.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 143.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 143.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 142.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 140.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 140.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 140.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 138.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 138.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 138.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 137.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 137.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 136.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 136.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 136.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 136.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 133.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 132.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 132.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 131.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 130.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 130.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 129.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 129.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 129.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 129.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 128.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 128.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 127.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 127.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 127.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 127.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 126.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 126.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 126.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 126.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 126.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 125.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 125.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 125.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 124.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 122.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 122.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 122.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 122.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 122.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 122.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 122.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 121.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 121.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 119.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 118.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 117.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 117.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 116.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 116.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 115.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 114.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 113.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 113.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 112.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 112.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 112.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 112.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 110.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 109.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 107.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 107.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 107.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 106.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 106.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 106.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 105.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 105.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 104.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 102.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 101.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 99.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 99.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 98.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 98.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 96.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 95.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 91.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 90.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 90.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 88.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 86.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 83.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 82.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 68.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

205.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 205.4
FF:10159-103A6 76 years, female 228.5
FF:10181-103D1 60 years, female 182.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 160.8
Samples: 4

Max nTPM: 219.9
Min nTPM: 113.8
Sample A Female 119.7
Sample B Female 189.6
Sample C Male 219.9
Sample D Male 113.8
Ventral spinal cord
nTPM: 142.5
Samples: 4

Max nTPM: 155.9
Min nTPM: 119.9
Sample A Female 119.9
Sample B Female 148.2
Sample C Male 146.0
Sample D Male 155.9

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