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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:263.3 nTPM
HPA Brain:135.6 nTPM
GTEx:263.3 nTPM
FANTOM5:52.4 Scaled Tags Per Million
Pig:37.8 nTPM
Mouse:100.9 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.6
Sample id Sample description nTPM
Amygdala
nTPM: 114.8
2695 Female, age 67, right hemisphere 141.1
2517 Female, age 94, left hemisphere 114.2
2814 Male, age 76, right hemisphere 113.0
2514 Male, age 75, right hemisphere 107.5
1987 Female, age 91, left hemisphere 98.0
Basal amygdala
nTPM: 122.4
2827 Female, age 67, right hemisphere 180.0
2685 Female, age 94, left hemisphere 130.0
2609 Male, age 75, right hemisphere 122.2
2110 Male, age 80, left hemisphere 106.3
2243 Female, age 91, right hemisphere 98.4
1955 Male, age 76, both hemispheres 97.4
Central amygdala
nTPM: 128.8
2826 Female, age 94, left hemisphere 201.7
2515 Male, age 75, right hemisphere 122.8
1905 Male, age 76, both hemispheres 109.7
2701 Female, age 91, right hemisphere 106.0
2239 Male, age 80, left hemisphere 103.8
Corticomedial amygdala
nTPM: 97.7
2535 Female, age 67, right hemisphere 134.3
2428 Male, age 75, right hemisphere 106.6
2829 Male, age 80, left hemisphere 94.6
2240 Male, age 76, both hemispheres 87.6
2429 Female, age 94, left hemisphere 82.1
2242 Female, age 91, right hemisphere 81.2
Lateral amygdala
nTPM: 135.6
2830 Female, age 67, right hemisphere 214.1
2534 Female, age 94, left hemisphere 132.5
2516 Male, age 75, right hemisphere 129.4
2256 Male, age 80, left hemisphere 127.6
2255 Female, age 91, right hemisphere 117.9
1883 Male, age 76, both hemispheres 92.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

263.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 263.3
Samples: 152

Max nTPM: 810.0
Min nTPM: 122.9
Std nTPM: 108.9
Median nTPM: 239.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 810.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 611.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 569.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 548.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 526.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 508.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 498.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 485.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 484.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 469.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 466.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 462.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 461.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 432.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 430.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 414.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 392.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 389.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 384.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 364.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 363.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 363.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 358.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 354.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 350.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 347.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 345.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 343.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 337.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 322.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 322.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 319.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 317.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 316.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 315.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 313.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 313.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 310.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 303.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 301.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 296.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 295.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 294.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 288.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 285.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 284.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 284.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 282.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 279.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 275.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 272.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 272.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 267.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 266.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 264.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 259.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 257.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 256.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 256.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 255.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 254.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 253.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 253.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 253.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 251.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 249.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 248.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 248.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 247.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 246.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 245.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 244.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 244.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 242.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 240.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 239.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 238.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 238.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 238.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 235.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 228.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 228.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 227.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 226.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 223.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 223.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 222.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 222.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 222.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 221.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 220.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 219.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 215.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 214.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 213.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 213.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 213.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 212.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 212.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 209.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 209.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 205.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 203.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 203.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 202.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 200.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 200.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 198.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 194.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 194.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 193.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 192.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 191.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 190.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 190.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 189.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 186.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 186.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 185.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 185.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 185.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 184.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 182.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 179.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 178.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 177.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 175.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 170.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 165.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 165.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 162.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 162.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 161.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 160.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 159.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 158.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 158.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 157.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 153.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 149.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 148.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 148.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 145.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 143.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 141.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 140.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 136.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 130.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 130.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 128.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 124.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 122.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

52.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 52.4
FF:10151-102I7 76 years, female 52.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.8
Pig sample Sample description nTPM
Amygdala
nTPM: 37.8
Samples: 4

Max nTPM: 43.5
Min nTPM: 28.0
Sample A Female 43.5
Sample B Female 39.7
Sample C Male 39.8
Sample D Male 28.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 100.9
Samples: 4

Max nTPM: 109.1
Min nTPM: 92.3
Sample A Male 92.3
Sample B Male 100.9
Sample C Female 109.1
Sample D Female 101.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
73497547 Antisense, RP_051121_01_C07, Mouse strain C57BL/6J (56 days, male) 0.0

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