MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:307.0 nTPM
HPA Brain:134.6 nTPM
GTEx:307.0 nTPM
FANTOM5:74.7 Scaled Tags Per Million
Pig:64.6 nTPM
Mouse:115.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 134.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 130.7
2586 Male, age 75, left hemisphere 178.3
2666 Male, age 74, left hemisphere 142.7
1830 Male, age 51, unknown 136.4
2019 Male, age 18, unknown 135.1
2828 Female, age 72, unknown 134.5
1833 Male, age 53, unknown 120.3
2411 Female, age 72, unknown 119.1
1827 Male, age 72, unknown 116.9
1870 Female, age 42, unknown 116.5
2219 Male, age 76, both hemispheres 107.4
Dorsal raphe nucleus
nTPM: 119.0
2750 Male, age 76, both hemispheres 121.7
1828 Male, age 53, unknown 121.5
2047 Male, age 72, unknown 121.1
2016 Female, age 72, unknown 118.3
2298 Female, age 72, unknown 112.2
Inferior colliculus
nTPM: 110.3
2849 Male, age 72, unknown 118.5
1890 Male, age 53, unknown 114.4
1848 Female, age 42, unknown 108.5
2097 Female, age 72, unknown 99.8
Median raphe nucleus
nTPM: 110.8
2220 Male, age 76, midline 110.8
Periaquaductal grey, anterior
nTPM: 120.6
2502 Female, age 75, unknown 124.0
1795 Male, age 51, unknown 119.8
1947 Male, age 18, unknown 118.0
Periaquaductal grey, dorsal
nTPM: 111.5
2850 Male, age 76, both hemispheres 114.4
2464 Female, age 72, unknown 113.5
1831 Male, age 72, unknown 111.7
1840 Male, age 53, unknown 106.5
Periaquaductal grey, lateral
nTPM: 117.9
2140 Male, age 76, both hemispheres 130.3
2272 Male, age 74, both hemispheres 111.8
2053 Male, age 18, unknown 111.6
Pretectal area
nTPM: 116.6
2316 Male, age 76, right hemisphere 132.3
2407 Male, age 75, both hemispheres 130.3
2007 Male, age 72, unknown 124.0
1815 Male, age 53, unknown 121.0
1817 Female, age 42, unknown 116.9
2667 Female, age 75, unknown 112.4
2825 Male, age 18, unknown 112.3
1944 Female, age 72, unknown 109.0
1816 Male, age 51, unknown 108.3
2224 Female, age 72, unknown 108.0
2273 Male, age 74, both hemispheres 107.9
Red nucleus
nTPM: 134.6
2584 Male, age 75, left hemisphere 162.4
2588 Male, age 74, left hemisphere 147.5
2785 Male, age 18, unknown 145.7
2769 Male, age 72, unknown 141.2
1865 Male, age 51, unknown 138.9
2503 Female, age 72, unknown 136.3
2227 Male, age 72, unknown 135.5
1904 Male, age 53, unknown 132.5
2725 Female, age 75, unknown 127.7
2823 Male, age 76, right hemisphere 118.9
1954 Female, age 42, unknown 115.5
1821 Female, age 72, unknown 113.0
Substantia nigra
nTPM: 117.1
2665 Male, age 74, both hemispheres 130.9
2583 Male, age 75, right hemisphere 130.5
2699 Male, age 18, unknown 127.6
2590 Female, age 75, unknown 124.5
2409 Female, age 72, unknown 121.2
1851 Male, age 51, unknown 118.3
1941 Male, age 53, unknown 115.1
1889 Female, age 72, unknown 109.3
1916 Female, age 42, unknown 101.6
2241 Male, age 72, unknown 91.6
Superior colliculus
nTPM: 124.5
2664 Male, age 75, both hemispheres 148.1
1913 Female, age 42, unknown 142.4
1995 Male, age 72, unknown 139.4
2587 Male, age 74, left hemisphere 122.9
2668 Female, age 75, unknown 122.1
1839 Male, age 51, unknown 117.8
1796 Male, age 53, unknown 116.3
2087 Female, age 72, unknown 115.1
2261 Male, age 18, unknown 110.9
1895 Male, age 76, right hemisphere 110.2
Ventral tegmental area
nTPM: 116.2
2021 Male, age 53, unknown 128.9
2223 Female, age 72, unknown 119.3
1942 Male, age 51, unknown 118.5
2410 Female, age 72, unknown 113.7
2218 Male, age 76, both hemispheres 109.4
1915 Female, age 42, unknown 107.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 307.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 307.0
Samples: 139

Max nTPM: 979.7
Min nTPM: 112.8
Std nTPM: 114.4
Median nTPM: 291.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 979.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 661.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 609.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 533.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 502.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 493.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 483.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 481.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 475.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 472.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 470.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 74.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.7
FF:10158-103A5 76 years, female 74.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 64.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 64.6
Samples: 4

Max nTPM: 73.8
Min nTPM: 54.7
Sample A Female 73.8
Sample B Female 68.3
Sample C Male 54.7
Sample D Male 61.5
Midbrain
nTPM: 63.7
Samples: 4

Max nTPM: 110.1
Min nTPM: 37.2
Sample A Female 110.1
Sample B Female 61.6
Sample C Male 45.7
Sample D Male 37.2
Periaqueductal gray
nTPM: 53.8
Samples: 3

Max nTPM: 60.2
Min nTPM: 47.4
Sample B Female 53.9
Sample C Male 60.2
Sample D Male 47.4
Superior colliculi
nTPM: 62.3
Samples: 4

Max nTPM: 74.5
Min nTPM: 52.7
Sample A Female 68.5
Sample B Female 74.5
Sample C Male 52.7
Sample D Male 53.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 115.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 115.8
Samples: 4

Max nTPM: 122.4
Min nTPM: 110.6
Sample A Male 122.4
Sample B Male 110.6
Sample C Female 113.4
Sample D Female 116.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
73497547 Antisense, RP_051121_01_C07, Mouse strain C57BL/6J (56 days, male) 0.0

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