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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:472.5 nTPM
HPA Brain:211.6 nTPM
GTEx:472.5 nTPM
FANTOM5:146.0 Scaled Tags Per Million
Pig:178.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

211.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 195.9
1981 Female, age 72, midline 247.1
2816 Male, age 47, midline 191.8
2194 Female, age 79, both hemispheres 188.1
2565 Male, age 75, midline 186.6
2048 Male, age 55, midline 165.9
Cervical spinal cord, dorsal horn
nTPM: 211.6
2296 Male, age 66, both hemispheres 336.6
2173 Female, age 72, unknown 279.4
2069 Male, age 47, both hemispheres 201.1
1877 Male, age 55, unknown 166.4
2297 Male, age 75, both hemispheres 148.9
2721 Male, age 90, both hemispheres 137.2
Cervical spinal cord, ventral horn
nTPM: 202.6
2098 Female, age 72, unknown 242.5
2480 Male, age 75, both hemispheres 213.3
2820 Female, age 79, both hemispheres 197.3
2068 Male, age 55, unknown 194.1
2809 Male, age 90, both hemispheres 189.1
2295 Male, age 66, both hemispheres 179.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

472.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 472.5
Samples: 159

Max nTPM: 919.7
Min nTPM: 217.5
Std nTPM: 135.2
Median nTPM: 463.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 919.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 896.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 804.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 777.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 773.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 765.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 758.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 743.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 734.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 721.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 713.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 699.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 686.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 678.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 648.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 645.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 627.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 627.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 625.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 624.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 623.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 615.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 614.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 613.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 608.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 606.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 603.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 599.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 587.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 577.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 576.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 571.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 567.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 559.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 556.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 552.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 552.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 551.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 549.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 548.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 539.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 534.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 532.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 526.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 525.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 522.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 521.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 519.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 517.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 515.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 513.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 508.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 505.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 504.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 504.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 501.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 499.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 496.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 494.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 494.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 494.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 493.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 493.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 493.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 493.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 492.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 491.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 489.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 488.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 485.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 483.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 479.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 477.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 477.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 474.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 470.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 466.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 466.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 465.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 463.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 460.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 459.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 455.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 455.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 454.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 449.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 445.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 443.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 443.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 443.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 442.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 442.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 442.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 441.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 439.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 438.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 435.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 432.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 430.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 426.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 425.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 423.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 423.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 422.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 422.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 417.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 416.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 412.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 403.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 402.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 402.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 400.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 397.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 397.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 396.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 395.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 392.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 389.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 388.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 381.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 377.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 374.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 372.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 370.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 366.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 361.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 357.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 348.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 347.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 342.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 342.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 337.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 337.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 332.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 331.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 329.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 328.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 327.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 326.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 319.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 318.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 309.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 309.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 309.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 309.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 307.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 297.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 292.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 291.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 271.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 261.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 260.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 259.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 256.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 235.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 225.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 223.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 221.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 217.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

146.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 146.0
FF:10181-103D1 60 years, female 180.0
FF:10159-103A6 76 years, female 112.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

178.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 121.2
Samples: 4

Max nTPM: 124.2
Min nTPM: 117.2
Sample A Female 124.2
Sample B Female 117.2
Sample C Male 120.6
Sample D Male 122.7
Ventral spinal cord
nTPM: 178.8
Samples: 4

Max nTPM: 198.0
Min nTPM: 156.6
Sample A Female 166.9
Sample B Female 198.0
Sample C Male 193.7
Sample D Male 156.6

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