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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1106.0 nTPM
HPA Brain:939.3 nTPM
GTEx:1106.0 nTPM
FANTOM5:316.3 Scaled Tags Per Million
Pig:1038.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

939.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 742.1
1981 Female, age 72, midline 899.3
2816 Male, age 47, midline 811.4
2194 Female, age 79, both hemispheres 761.0
2565 Male, age 75, midline 658.4
2048 Male, age 55, midline 580.3
Cervical spinal cord, dorsal horn
nTPM: 939.3
2296 Male, age 66, both hemispheres 1819.2
2173 Female, age 72, unknown 1231.1
2069 Male, age 47, both hemispheres 870.0
1877 Male, age 55, unknown 723.7
2297 Male, age 75, both hemispheres 549.2
2721 Male, age 90, both hemispheres 442.8
Cervical spinal cord, ventral horn
nTPM: 843.9
2068 Male, age 55, unknown 926.4
2098 Female, age 72, unknown 893.4
2480 Male, age 75, both hemispheres 890.9
2820 Female, age 79, both hemispheres 880.8
2809 Male, age 90, both hemispheres 757.9
2295 Male, age 66, both hemispheres 713.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1106.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1106.0
Samples: 159

Max nTPM: 2417.8
Min nTPM: 284.0
Std nTPM: 425.6
Median nTPM: 1030.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2417.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2325.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 2223.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 2135.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 2101.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 2089.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2069.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1981.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1911.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1897.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1879.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1869.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1795.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1730.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1717.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1709.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1695.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1634.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1599.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1587.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1539.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1527.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1522.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1490.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1483.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1455.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1438.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1436.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1423.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1423.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1421.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1416.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1408.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1397.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1386.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1384.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1380.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1380.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1374.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1372.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1365.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1359.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1359.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1337.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1334.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1330.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1325.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1317.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1310.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1298.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1280.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1280.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1269.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1265.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1262.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1240.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1221.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1218.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1211.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1207.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1206.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1186.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1182.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1173.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1171.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1139.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1130.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1128.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1127.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1123.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1122.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1111.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1106.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1087.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1083.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1072.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1071.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1038.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1030.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1030.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1023.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1018.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1018.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1016.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1014.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1011.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1002.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1000.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 984.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 982.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 979.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 974.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 970.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 951.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 946.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 937.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 934.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 926.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 922.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 917.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 915.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 895.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 890.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 889.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 888.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 879.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 879.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 873.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 872.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 863.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 845.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 836.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 821.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 808.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 796.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 788.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 786.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 776.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 771.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 770.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 770.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 767.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 764.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 760.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 760.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 756.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 756.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 755.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 753.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 732.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 725.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 718.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 714.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 710.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 703.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 687.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 687.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 680.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 662.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 659.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 647.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 628.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 624.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 614.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 588.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 577.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 572.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 571.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 559.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 524.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 513.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 498.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 494.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 449.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 440.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 440.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 392.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 371.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 284.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

316.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 316.3
FF:10181-103D1 60 years, female 377.7
FF:10159-103A6 76 years, female 254.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1038.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 841.9
Samples: 4

Max nTPM: 964.9
Min nTPM: 617.0
Sample A Female 956.4
Sample B Female 829.1
Sample C Male 617.0
Sample D Male 964.9
Ventral spinal cord
nTPM: 1038.1
Samples: 4

Max nTPM: 1183.5
Min nTPM: 867.5
Sample A Female 1141.6
Sample B Female 959.9
Sample C Male 867.5
Sample D Male 1183.5

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