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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:2108.3 nTPM
HPA:1210.6 nTPM
GTEx:2108.3 nTPM
FANTOM5:32.3 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1210.6
overview
Male, age 65
Small intestine sample 232
nTPM: 1619
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1011.2
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1094.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1117.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2108.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2108.3
Samples: 187

Max nTPM: 4884.7
Min nTPM: 1026.1
Std nTPM: 746.9
Median nTPM: 1945.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 4884.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 4815.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 4349.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 3983.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 3873.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 3771.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 3714.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 3695.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 3661.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 3638.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 3627.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 3564.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 3412.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 3408.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 3391.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 3362.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 3243.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 3183.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 3138.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 3094.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 3053.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2992.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 2945.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2936.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 2925.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 2891.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2882.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2868.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 2814.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 2788.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 2775.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 2767.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 2764.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2749.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 2738.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2732.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 2657.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2655.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 2639.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 2631.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2621.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 2615.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 2593.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2585.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 2579.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 2534.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2531.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 2530.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 2524.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 2478.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2472.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 2470.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 2441.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 2433.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2420.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 2405.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 2394.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 2380.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 2379.3
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2377.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 2361.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 2354.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 2347.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 2335.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 2327.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 2280.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 2253.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 2249.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 2247.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 2234.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 2227.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 2213.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 2201.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2171.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 2164.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 2154.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 2150.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 2128.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 2114.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 2077.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2064.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 2053.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2053.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 2037.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2017.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 2011.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 2003.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1992.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1988.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1988.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1976.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1963.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1955.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1945.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1944.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1943.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1939.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1924.1
GTEX-1192X-2526-SM-59868 50-59 years, male 1885.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1860.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1853.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1805.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1802.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1782.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1777.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1769.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1755.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1735.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1734.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1731.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1728.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1719.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1707.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1695.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1690.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1688.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1675.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1666.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1666.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1665.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1663.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1655.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1650.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1646.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1629.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1624.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1596.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1590.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1586.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1583.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1577.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1552.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1550.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 1550.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1547.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1546.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1543.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1541.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1531.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1530.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1526.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1525.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 1518.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1511.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1511.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1510.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1508.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1500.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1497.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1492.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1487.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 1485.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1455.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1452.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1450.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1450.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1438.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1430.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1425.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1419.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1416.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1408.2
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1399.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1394.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1382.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1364.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1359.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1355.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1354.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1353.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1332.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1316.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1300.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1288.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1286.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1280.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1275.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1272.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1272.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 1231.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1200.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 1169.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1127.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1097.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1076.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1033.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1026.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

32.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 32.3
FF:10024-101D6 15,40,85 years, mixed 32.3

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