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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1219.8 nTPM
HPA Brain:706.5 nTPM
GTEx:1219.8 nTPM
FANTOM5:18.4 Scaled Tags Per Million
Pig:811.6 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

706.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 562.9
1981 Female, age 72, midline 724.3
2565 Male, age 75, midline 686.1
2048 Male, age 55, midline 486.4
2816 Male, age 47, midline 459.5
2194 Female, age 79, both hemispheres 458.0
Cervical spinal cord, dorsal horn
nTPM: 558.5
2173 Female, age 72, unknown 748.7
2069 Male, age 47, both hemispheres 670.5
1877 Male, age 55, unknown 581.6
2296 Male, age 66, both hemispheres 533.6
2297 Male, age 75, both hemispheres 415.0
2721 Male, age 90, both hemispheres 401.3
Cervical spinal cord, ventral horn
nTPM: 706.5
2809 Male, age 90, both hemispheres 1002.8
2098 Female, age 72, unknown 895.6
2480 Male, age 75, both hemispheres 830.3
2295 Male, age 66, both hemispheres 579.3
2068 Male, age 55, unknown 571.3
2820 Female, age 79, both hemispheres 359.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1219.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1219.8
Samples: 159

Max nTPM: 3041.8
Min nTPM: 438.1
Std nTPM: 438.6
Median nTPM: 1138.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 3041.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 2845.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2520.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2402.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 2151.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2077.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 2075.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2058.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 2041.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1959.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1921.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1901.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1884.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1875.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1805.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1769.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1749.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1746.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1675.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1673.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1670.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1648.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1611.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1603.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1602.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1585.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1584.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1566.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1546.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1544.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1534.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1527.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1514.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1497.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1489.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1486.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1478.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1476.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1476.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1475.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1469.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1467.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1439.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1427.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1423.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1423.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1411.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1398.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1396.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1388.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1385.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1373.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1367.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1343.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1341.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1337.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1331.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1324.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1317.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1315.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1306.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1304.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1303.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1301.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1263.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1232.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1214.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1206.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1204.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1204.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1204.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1203.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1198.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1185.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1185.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1172.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1169.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1151.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1151.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1138.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1136.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1109.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1108.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1101.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1098.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1074.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1058.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1056.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1048.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1047.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1044.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1044.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1044.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1043.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1039.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1034.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1029.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1027.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1023.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1022.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1021.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1009.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1008.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 996.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 994.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 992.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 977.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 974.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 965.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 963.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 962.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 961.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 961.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 953.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 942.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 938.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 931.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 928.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 927.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 925.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 920.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 907.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 903.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 901.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 900.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 897.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 882.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 879.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 877.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 877.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 876.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 875.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 856.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 818.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 813.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 799.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 779.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 776.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 771.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 769.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 768.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 754.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 733.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 729.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 724.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 700.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 700.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 699.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 684.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 680.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 656.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 618.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 611.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 608.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 606.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 526.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 516.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 493.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 438.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

18.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 18.4
FF:10181-103D1 60 years, female 19.4
FF:10159-103A6 76 years, female 17.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

811.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 811.6
Samples: 4

Max nTPM: 1168.7
Min nTPM: 572.0
Sample A Female 572.0
Sample B Female 905.3
Sample C Male 1168.7
Sample D Male 600.3
Ventral spinal cord
nTPM: 687.4
Samples: 4

Max nTPM: 768.2
Min nTPM: 526.3
Sample A Female 526.3
Sample B Female 768.2
Sample C Male 753.3
Sample D Male 701.9

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