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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:93.6 nTPM
HPA:56.6 nTPM
GTEx:93.6 nTPM
FANTOM5:139.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003928Antibody CAB004214
Glandular cells MediumMedium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.6
overview
Male, age 65
Small intestine sample 232
nTPM: 60
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 57.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 56.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 53

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

93.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 93.6
Samples: 187

Max nTPM: 135.3
Min nTPM: 64.5
Std nTPM: 12.7
Median nTPM: 92.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 135.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 132.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 130.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 130.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 126.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 126.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 125.8
GTEX-1192X-2526-SM-59868 50-59 years, male 124.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 119.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 117.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 115.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 115.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 114.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 113.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 111.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 111.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 110.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 108.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 107.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 107.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 107.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 106.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 106.2
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 106.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 106.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 105.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 105.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 105.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 105.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 105.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 104.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 104.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 104.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 104.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 104.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 103.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 103.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 102.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 102.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 101.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 101.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 101.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 101.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 100.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 100.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 100.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 100.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 100.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 100.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 99.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 99.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 99.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 99.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 98.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 98.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 98.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 98.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 98.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 98.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 97.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 97.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 97.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 97.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 97.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 97.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 97.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 97.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 96.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 96.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 96.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 96.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 96.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 96.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 95.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 95.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 95.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 95.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 95.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 95.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 94.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 94.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 94.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 94.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 94.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 93.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 93.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 92.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 92.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 92.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 92.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 92.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 92.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 92.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 92.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 92.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 92.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 91.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 91.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 91.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 91.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 90.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 90.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 90.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 90.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 89.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 89.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 89.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 89.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 89.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 89.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 89.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 89.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 89.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 89.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 89.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 89.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 88.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 88.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 88.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 88.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 88.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 88.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 88.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 88.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 88.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 88.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 87.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 87.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 87.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 87.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 87.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 87.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 87.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 86.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 86.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 86.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 86.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 85.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 85.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 85.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 85.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 85.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 84.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 84.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 84.6
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 84.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 84.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 83.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 83.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 83.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 83.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 83.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 83.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 82.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 82.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 82.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 82.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 82.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 82.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 81.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 81.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 81.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 81.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 81.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 80.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 80.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 79.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 78.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 78.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 78.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 78.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 77.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 77.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 77.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 77.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 76.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 75.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 75.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 73.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 73.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 73.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 71.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 69.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 69.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 67.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 65.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 64.5
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

139.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 139.8
FF:10024-101D6 15,40,85 years, mixed 139.8

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