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  • ATP1A3
BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

62.976
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:207.9 nTPM
HPA Brain:669.0 nTPM
GTEx:207.9 nTPM
FANTOM5:1106.3 Scaled Tags Per Million
Pig:652.0 nTPM
Mouse:1074.5 nTPM
Allen mouse:22.9 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA045367Antibody HPA056446Antibody CAB033630
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedNot detected





HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody CAB033630
Hippocampal formation mean intensity 62.976
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 10.038
Molecular layer of the dentate gyrus 55.537
Granular dentate gyrus 10.372
CA1 - oriens layer 32.307
CA1 - pyramidal layer 19.651
CA1 - radiatum layer 35.920
CA2 - oriens layer 62.976
CA2 - pyramidal layer 23.707
CA2 - radiatum layer 54.017
CA3 - oriens layer 52.806
CA3 - pyramidal layer 35.283
CA3 - radiatum layer 58.693
Stratum lucidum 14.901
Lacunosum moleculare 27.653
Subiculum 52.616

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

669.0
Sample id Sample description nTPM
Hippocampus
nTPM: 542.9
1898 Male, age 80, left hemisphere 779.0
2621 Female, age 67, right hemisphere 707.5
1855 Male, age 76, left hemisphere 611.2
2148 Female, age 91, left hemisphere 527.9
2529 Female, age 94, left hemisphere 322.2
1911 Female, age 85, right hemisphere 309.5
Dentate gyrus
nTPM: 623.3
2530 Female, age 94, left hemisphere 929.9
1927 Female, age 91, both hemispheres 870.7
2010 Male, age 76, both hemispheres 624.7
2528 Male, age 74, both hemispheres 446.5
2531 Female, age 67, both hemispheres 434.2
2246 Female, age 85, both hemispheres 433.7
Entorhinal gyrus
nTPM: 455.0
2613 Female, age 94, left hemisphere 674.8
2764 Male, age 80, right hemisphere 542.8
1938 Female, age 85, left hemisphere 435.7
1787 Male, age 76, left hemisphere 429.4
2686 Male, age 75, right hemisphere 388.8
2117 Female, age 91, right hemisphere 258.8
Hippocampus, CA1
nTPM: 669.0
2749 Male, age 80, left hemisphere 1264.1
1873 Female, age 85, both hemispheres 615.5
2527 Male, age 74, both hemispheres 576.2
2045 Male, age 76, both hemispheres 496.5
2082 Female, age 91, right hemisphere 392.9
Hippocampus, CA2
nTPM: 571.3
1963 Male, age 80, left hemisphere 880.4
2437 Female, age 94, left hemisphere 790.6
1892 Male, age 76, both hemispheres 786.3
2249 Male, age 74, both hemispheres 380.9
2113 Female, age 91, right hemisphere 321.1
1940 Female, age 85, left hemisphere 268.4
Hippocampus, CA3
nTPM: 519.0
2137 Male, age 80, left hemisphere 739.3
1867 Male, age 76, both hemispheres 545.2
2620 Female, age 94, left hemisphere 531.5
2861 Female, age 67, both hemispheres 517.1
2436 Male, age 74, both hemispheres 424.3
1891 Female, age 85, both hemispheres 356.4
Parahippocampal cortex
nTPM: 465.7
2245 Female, age 91, both hemispheres 645.8
1990 Female, age 91, right hemisphere 629.9
2250 Female, age 67, right hemisphere 588.6
2693 Female, age 94, both hemispheres 494.8
1850 Male, age 80, both hemispheres 459.3
1933 Female, age 85, both hemispheres 417.6
2018 Male, age 76, both hemispheres 376.8
2692 Male, age 74, both hemispheres 360.2
2622 Female, age 67, right hemisphere 356.0
2532 Female, age 72, left hemisphere 328.3
Perirhinal gyrus
nTPM: 575.3
1847 Female, age 91, left hemisphere 898.3
2521 Female, age 94, right hemisphere 717.8
1794 Male, age 80, right hemisphere 504.2
2848 Male, age 76, right hemisphere 379.3
1841 Female, age 85, right hemisphere 377.2
Subiculum
nTPM: 452.4
2438 Female, age 94, left hemisphere 635.6
1901 Male, age 80, both hemispheres 524.8
1977 Female, age 85, both hemispheres 505.5
2619 Male, age 74, both hemispheres 418.8
2042 Male, age 76, both hemispheres 318.1
2729 Female, age 91, right hemisphere 311.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

207.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 207.9
Samples: 197

Max nTPM: 863.5
Min nTPM: 2.4
Std nTPM: 168.6
Median nTPM: 173.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 863.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 776.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 765.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 702.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 692.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 675.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 653.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 620.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 607.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 574.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 519.4
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 508.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 470.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 468.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 457.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 455.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 452.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 451.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 434.2
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 433.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 425.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 417.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 407.4
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 397.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 395.6
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 394.7
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 383.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 382.7
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 376.0
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 366.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 365.8
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 360.7
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 355.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 351.9
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 350.8
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 348.3
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 348.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 346.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 335.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 323.7
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 312.6
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 311.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 311.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 301.2
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 297.9
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 290.5
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 289.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 286.6
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 280.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 280.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 277.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 276.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 275.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 275.0
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 272.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 270.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 270.4
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 263.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 255.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 250.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 248.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 245.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 244.4
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 242.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 242.4
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 240.4
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 239.4
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 233.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 233.4
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 231.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 231.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 231.2
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 230.7
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 230.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 224.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 222.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 221.5
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 219.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 217.2
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 215.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 214.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 211.5
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 211.4
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 209.7
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 209.1
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 205.3
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 201.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 199.2
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 197.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 195.1
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 191.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 189.9
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 184.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 182.7
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 181.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 180.1
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 176.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 176.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 173.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 173.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 173.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 169.0
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 164.7
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 164.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 163.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 162.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 161.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 160.6
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 160.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 156.6
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 155.3
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 153.7
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 152.1
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 149.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 144.7
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 144.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 137.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 135.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 134.9
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 132.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 131.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 131.5
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 124.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 117.7
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 116.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 116.1
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 112.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 111.6
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 110.8
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 110.0
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 109.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 108.0
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 107.0
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 105.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 104.4
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 103.5
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 102.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 99.3
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 90.3
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 89.5
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 83.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 83.2
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 82.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 82.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 80.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 79.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 75.4
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 74.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 72.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 70.6
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 70.6
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 70.4
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 70.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 69.3
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 68.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 66.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 63.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 62.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 62.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 58.7
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 58.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 57.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 55.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 55.5
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 51.1
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 50.9
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 48.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 47.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 43.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 42.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 42.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 38.1
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 36.1
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 35.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 30.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 30.1
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 29.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 29.5
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 27.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 26.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 23.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 20.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 18.5
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 18.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 17.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 16.4
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 16.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 13.4
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 13.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 13.2
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 12.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 11.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 10.8
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 8.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 8.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 3.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 2.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1106.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1106.3
FF:10169-103B7 60 years, female 1442.5
FF:10153-102I9 76 years, female 770.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

652.0
Pig sample Sample description nTPM
Subiculum
nTPM: 461.7
Samples: 4

Max nTPM: 613.6
Min nTPM: 353.3
Sample A Female 613.6
Sample B Female 363.1
Sample C Male 516.7
Sample D Male 353.3
Dorsal hippocampus
nTPM: 612.3
Samples: 4

Max nTPM: 825.5
Min nTPM: 398.7
Sample A Female 825.5
Sample B Female 680.9
Sample C Male 543.9
Sample D Male 398.7
Entorhinal cortex
nTPM: 425.0
Samples: 4

Max nTPM: 491.8
Min nTPM: 390.4
Sample A Female 491.8
Sample B Female 413.2
Sample C Male 404.6
Sample D Male 390.4
Ventral hippocampus
nTPM: 652.0
Samples: 4

Max nTPM: 870.8
Min nTPM: 345.3
Sample A Female 779.6
Sample B Female 345.3
Sample C Male 870.8
Sample D Male 612.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1074.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 883.9
Samples: 4

Max nTPM: 1105.4
Min nTPM: 743.8
Sample A Male 850.9
Sample B Male 743.8
Sample C Female 835.5
Sample D Female 1105.4
Hippocampal formation
nTPM: 1074.5
Samples: 4

Max nTPM: 1242.4
Min nTPM: 824.1
Sample A Male 824.1
Sample B Male 1196.7
Sample C Female 1242.4
Sample D Female 1034.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 22.9
70539163 Antisense, RP_050324_02_A06, Mouse strain C57BL/6J (56 days, male) 24.6
74881263 Antisense, RP_060315_01_A02, Mouse strain C57BL/6J (56 days, male) 21.2

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