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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:283.5 nTPM
GTEx:283.5 nTPM
FANTOM5:369.3 Scaled Tags Per Million
Pig:740.4 nTPM
Mouse:1239.2 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

283.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 283.5
Samples: 105

Max nTPM: 650.8
Min nTPM: 27.0
Std nTPM: 144.0
Median nTPM:
352_1 62 years, male 650.8
163_1 78 years, male 582.7
319_1 81 years, male 551.0
377_1 82 years, female 532.9
172_1 72 years, female 518.4
386_1 76 years, male 515.0
177_1 74 years, male 509.8
425_1 59 years, female 506.2
350_1 84 years, female 503.5
243_1 75 years, male 499.5
353_1 82 years, female 474.6
349_1 83 years, male 474.0
251_1 78 years, male 473.2
376_1 75 years, female 472.3
354_1 81 years, female 470.1
292_1 71 years, male 462.1
321_1 62 years, female 458.3
335_1 73 years, female 444.3
356_1 87 years, female 439.1
320_1 89 years, female 435.9
293_1 68 years, female 427.9
218_1 71 years, female 426.2
355_1 70 years, female 423.7
316_1 62 years, male 405.1
286_1 68 years, female 396.6
351_1 91 years, male 389.9
318_1 68 years, male 387.2
452_1 88 years, female 382.2
406_1 79 years, male 378.5
229_1 69 years, female 373.0
189_1 76 years, male 370.6
6_1 73 years, female 362.0
506_1 65 years, male 352.4
503_1 68 years, male 351.7
322_1 76 years, male 348.7
237_1 82 years, male 342.9
379_1 60 years, male 342.7
394_1 75 years, female 339.0
404_1 82 years, female 337.9
246_1 77 years, male 326.2
517_1 88 years, male 320.1
295_1 61 years, female 317.5
405_1 91 years, male 316.3
264_1 73 years, female 314.9
291_1 76 years, male 313.8
389_1 86 years, female 303.2
348_1 84 years, male 302.5
375_1 74 years, female 298.3
254_1 77 years, female 297.6
447_1 81 years, male 296.4
526_1 61 years, male 292.4
480_1 63 years, male 283.0
347_1 72 years, male 272.6
173_1 67 years, male 265.6
396_1 62 years, male 261.8
265_1 87 years, male 261.1
115_1 83 years, male 260.7
266_1 85 years, male 260.4
468_1 89 years, male 254.4
317_1 60 years, male 249.3
9_1 66 years, female 240.4
518_1 75 years, female 235.1
18_1 88 years, male 227.2
153_1 70 years, female 224.9
17_1 71 years, male 222.4
384_1 83 years, male 222.3
324_1 76 years, male 220.1
4_1 88 years, female 219.0
99_1 64 years, male 214.5
288_1 66 years, female 202.7
126_1 63 years, male 200.1
2_1 77 years, female 198.7
137_1 83 years, male 198.5
217_1 76 years, male 196.5
311_1 78 years, male 193.1
145_1 84 years, male 190.4
120_1 70 years, female 189.5
35_1 74 years, female 178.3
499_1 55 years, female 171.4
313_1 79 years, female 167.4
109_1 81 years, female 154.9
81_1 67 years, male 149.7
314_1 67 years, male 137.6
117_1 61 years, male 136.8
142_1 61 years, female 135.8
139_1 64 years, female 127.3
41_1 94 years, female 126.7
315_1 62 years, female 123.3
32_1 67 years, male 119.1
43_1 64 years, female 117.2
42_1 85 years, male 115.3
415_1 77 years, female 114.1
307_1 66 years, female 112.6
162_1 79 years, female 98.8
414_1 84 years, female 95.4
466_1 57 years, female 91.4
501_1 88 years, male 85.1
119_1 70 years, female 75.8
495_1 57 years, female 70.9
89_1 63 years, male 64.2
149_1 88 years, male 60.0
413_1 59 years, female 53.3
308_1 70 years, female 52.3
490_1 67 years, female 35.1
491_1 89 years, female 27.0
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

369.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 369.3
FF:10030-101E3 24-65 years, mixed 369.3

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

740.4
Pig sample Sample description nTPM
Retina
nTPM: 740.4
Samples: 4

Max nTPM: 784.7
Min nTPM: 642.3
Sample A Female 759.6
Sample B Female 775.0
Sample C Male 784.7
Sample D Male 642.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1239.2
Mouse sample Sample description nTPM
Retina
nTPM: 1239.2
Samples: 4

Max nTPM: 1352.6
Min nTPM: 1073.5
Sample A Male 1352.6
Sample B Male 1203.5
Sample C Female 1327.2
Sample D Female 1073.5

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