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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

119.226
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:143.0 nTPM
HPA Brain:208.5 nTPM
GTEx:143.0 nTPM
FANTOM5:356.2 Scaled Tags Per Million
Pig:334.5 nTPM
Mouse:658.1 nTPM
Allen mouse:21.6 Expression energy

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody CAB078998
Amygdala mean intensity 119.226
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the lateral olfactory tract -
Basal medial amygdaloid nucleus 91.374
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 76.143
Cortical amygdala 97.696
Central amygdala 72.861
Medial amygdaloid nucleus 79.732

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

208.5
Sample id Sample description nTPM
Amygdala
nTPM: 162.1
2814 Male, age 76, right hemisphere 294.1
1987 Female, age 91, left hemisphere 192.3
2517 Female, age 94, left hemisphere 141.6
2695 Female, age 67, right hemisphere 99.5
2514 Male, age 75, right hemisphere 83.1
Basal amygdala
nTPM: 198.1
2243 Female, age 91, right hemisphere 335.5
2685 Female, age 94, left hemisphere 232.6
1955 Male, age 76, both hemispheres 228.3
2110 Male, age 80, left hemisphere 187.2
2827 Female, age 67, right hemisphere 118.5
2609 Male, age 75, right hemisphere 86.3
Central amygdala
nTPM: 208.5
1905 Male, age 76, both hemispheres 282.1
2239 Male, age 80, left hemisphere 240.1
2826 Female, age 94, left hemisphere 215.3
2701 Female, age 91, right hemisphere 215.0
2515 Male, age 75, right hemisphere 90.1
Corticomedial amygdala
nTPM: 200.5
2242 Female, age 91, right hemisphere 272.5
2829 Male, age 80, left hemisphere 242.5
2240 Male, age 76, both hemispheres 229.5
2429 Female, age 94, left hemisphere 209.3
2535 Female, age 67, right hemisphere 172.8
2428 Male, age 75, right hemisphere 76.6
Lateral amygdala
nTPM: 176.1
2534 Female, age 94, left hemisphere 311.7
1883 Male, age 76, both hemispheres 272.4
2255 Female, age 91, right hemisphere 183.3
2256 Male, age 80, left hemisphere 153.4
2830 Female, age 67, right hemisphere 71.3
2516 Male, age 75, right hemisphere 64.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 143.0
Samples: 152

Max nTPM: 524.9
Min nTPM: 9.7
Std nTPM: 89.4
Median nTPM: 127.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 524.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 418.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 359.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 331.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 309.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 308.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 300.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 298.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 284.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 276.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 272.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 263.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 261.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 260.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 260.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 259.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 256.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 256.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 255.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 253.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 252.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 248.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 248.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 245.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 242.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 241.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 241.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 240.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 235.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 234.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 232.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 231.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 223.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 223.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 217.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 215.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 213.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 208.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 204.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 191.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 191.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 190.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 189.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 185.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 185.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 180.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 179.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 177.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 174.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 171.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 170.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 168.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 168.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 167.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 167.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 163.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 160.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 159.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 157.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 157.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 155.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 151.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 151.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 147.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 146.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 145.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 145.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 144.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 140.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 134.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 134.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 132.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 130.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 130.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 127.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 127.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 126.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 122.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 117.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 117.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 117.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 115.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 113.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 109.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 108.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 107.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 107.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 106.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 104.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 103.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 102.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 102.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 102.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 101.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 101.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 92.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 91.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 88.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 88.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 88.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 86.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 86.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 86.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 83.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 80.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 79.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 79.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 78.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 77.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 75.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 73.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 72.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 69.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 68.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 68.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 68.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 67.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 66.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 65.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 65.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 64.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 63.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 63.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 63.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 62.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 59.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 58.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 58.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 58.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 57.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 56.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 56.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 55.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 55.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 52.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 50.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 47.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 40.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 38.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 36.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 33.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 32.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 32.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 31.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 29.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 27.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 27.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 22.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 17.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 15.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 14.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 9.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

356.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 356.2
FF:10151-102I7 76 years, female 356.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

334.5
Pig sample Sample description nTPM
Amygdala
nTPM: 334.5
Samples: 4

Max nTPM: 553.0
Min nTPM: 195.9
Sample A Female 553.0
Sample B Female 195.9
Sample C Male 275.4
Sample D Male 313.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

658.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 658.1
Samples: 4

Max nTPM: 716.2
Min nTPM: 619.7
Sample A Male 716.2
Sample B Male 619.7
Sample C Female 675.1
Sample D Female 621.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.6
68924503 Antisense, RP_050303_02_E02, Mouse strain C57BL/6J (56 days, male) 21.6

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