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  • RAB3A
BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

91.428
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:186.3 nTPM
HPA Brain:375.1 nTPM
GTEx:186.3 nTPM
FANTOM5:440.8 Scaled Tags Per Million
Pig:556.9 nTPM
Mouse:644.8 nTPM
Allen mouse:18.7 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003160Antibody CAB009949
Glial cells MediumLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody CAB078998
Hippocampal formation mean intensity 91.428
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 55.896
Molecular layer of the dentate gyrus 51.665
Granular dentate gyrus 36.994
CA1 - oriens layer 79.929
CA1 - pyramidal layer 50.103
CA1 - radiatum layer 85.160
CA2 - oriens layer 91.428
CA2 - pyramidal layer 52.931
CA2 - radiatum layer 74.743
CA3 - oriens layer 76.290
CA3 - pyramidal layer 39.249
CA3 - radiatum layer 70.347
Stratum lucidum 59.654
Lacunosum moleculare 44.334
Subiculum 67.714

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

375.1
Sample id Sample description nTPM
Hippocampus
nTPM: 262.4
2621 Female, age 67, right hemisphere 400.9
1898 Male, age 80, left hemisphere 318.4
2148 Female, age 91, left hemisphere 237.4
1911 Female, age 85, right hemisphere 226.6
1855 Male, age 76, left hemisphere 224.2
2529 Female, age 94, left hemisphere 167.0
Dentate gyrus
nTPM: 279.1
1927 Female, age 91, both hemispheres 399.8
2530 Female, age 94, left hemisphere 346.7
2246 Female, age 85, both hemispheres 263.9
2010 Male, age 76, both hemispheres 241.7
2528 Male, age 74, both hemispheres 219.2
2531 Female, age 67, both hemispheres 203.4
Entorhinal gyrus
nTPM: 306.0
2613 Female, age 94, left hemisphere 541.9
2764 Male, age 80, right hemisphere 341.4
1938 Female, age 85, left hemisphere 314.7
1787 Male, age 76, left hemisphere 269.7
2686 Male, age 75, right hemisphere 214.2
2117 Female, age 91, right hemisphere 153.8
Hippocampus, CA1
nTPM: 310.4
2749 Male, age 80, left hemisphere 582.5
2527 Male, age 74, both hemispheres 329.4
1873 Female, age 85, both hemispheres 273.8
2045 Male, age 76, both hemispheres 192.0
2082 Female, age 91, right hemisphere 174.4
Hippocampus, CA2
nTPM: 280.5
1892 Male, age 76, both hemispheres 385.5
2437 Female, age 94, left hemisphere 334.4
1963 Male, age 80, left hemisphere 284.9
2249 Male, age 74, both hemispheres 273.8
1940 Female, age 85, left hemisphere 205.5
2113 Female, age 91, right hemisphere 198.8
Hippocampus, CA3
nTPM: 298.0
2137 Male, age 80, left hemisphere 463.7
1867 Male, age 76, both hemispheres 293.9
2436 Male, age 74, both hemispheres 289.6
2861 Female, age 67, both hemispheres 267.7
2620 Female, age 94, left hemisphere 261.8
1891 Female, age 85, both hemispheres 211.3
Parahippocampal cortex
nTPM: 332.3
2245 Female, age 91, both hemispheres 497.7
2250 Female, age 67, right hemisphere 401.5
1990 Female, age 91, right hemisphere 367.8
2693 Female, age 94, both hemispheres 356.2
1850 Male, age 80, both hemispheres 346.6
2622 Female, age 67, right hemisphere 311.7
2532 Female, age 72, left hemisphere 311.5
1933 Female, age 85, both hemispheres 289.0
2692 Male, age 74, both hemispheres 250.2
2018 Male, age 76, both hemispheres 190.7
Perirhinal gyrus
nTPM: 375.1
1847 Female, age 91, left hemisphere 546.0
2521 Female, age 94, right hemisphere 383.0
1794 Male, age 80, right hemisphere 355.1
1841 Female, age 85, right hemisphere 329.7
2848 Male, age 76, right hemisphere 261.5
Subiculum
nTPM: 258.8
2438 Female, age 94, left hemisphere 370.1
1901 Male, age 80, both hemispheres 319.4
1977 Female, age 85, both hemispheres 282.2
2619 Male, age 74, both hemispheres 279.2
2042 Male, age 76, both hemispheres 182.4
2729 Female, age 91, right hemisphere 119.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

186.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 186.3
Samples: 197

Max nTPM: 536.6
Min nTPM: 11.7
Std nTPM: 132.3
Median nTPM: 165.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 536.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 506.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 498.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 496.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 489.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 488.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 480.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 459.3
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 456.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 450.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 449.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 445.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 442.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 437.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 426.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 415.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 405.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 403.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 394.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 385.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 384.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 380.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 349.1
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 343.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 338.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 333.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 333.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 331.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 330.3
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 325.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 321.2
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 320.2
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 319.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 319.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 316.1
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 315.5
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 309.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 309.5
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 306.4
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 303.1
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 300.7
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 295.9
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 290.8
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 290.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 288.3
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 286.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 280.3
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 279.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 279.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 279.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 274.5
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 271.3
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 268.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 267.1
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 265.7
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 263.7
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 261.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 253.7
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 249.9
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 249.5
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 249.0
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 247.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 245.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 244.8
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 238.4
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 237.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 232.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 231.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 229.9
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 229.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 226.9
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 224.7
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 222.0
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 220.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 217.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 214.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 213.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 210.8
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 206.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 205.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 204.6
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 204.5
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 192.2
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 191.9
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 190.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 186.5
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 185.2
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 184.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 183.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 180.3
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 177.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 173.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 170.1
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 169.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 169.3
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 167.3
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 166.8
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 166.2
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 165.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 164.2
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 162.0
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 159.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 159.0
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 157.7
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 157.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 153.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 147.7
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 147.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 142.6
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 141.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 139.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 137.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 136.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 134.2
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 131.3
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 130.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 125.3
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 124.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 123.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 122.3
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 119.3
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 118.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 115.3
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 115.1
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 112.3
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 111.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 111.0
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 109.7
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 109.3
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 107.8
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 106.8
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 106.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 104.6
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 103.5
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 102.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 101.9
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 93.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 89.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 89.5
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 88.6
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 88.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 84.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 81.8
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 81.2
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 79.6
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 77.0
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 72.5
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 72.2
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 70.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 70.1
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 65.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 60.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 59.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 53.5
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 52.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 52.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 51.8
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 51.2
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 50.9
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 50.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 49.6
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 48.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 47.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 46.5
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 46.5
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 46.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 44.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 44.6
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 43.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 41.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 38.7
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 37.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 35.0
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 34.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 33.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 29.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 29.4
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 29.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 29.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 29.0
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 27.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 25.7
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 25.7
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 25.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 24.3
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 24.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 23.4
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 20.9
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 20.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 20.4
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 18.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 16.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 16.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 14.8
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 14.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 12.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 11.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

440.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 440.8
FF:10169-103B7 60 years, female 635.6
FF:10153-102I9 76 years, female 246.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

556.9
Pig sample Sample description nTPM
Subiculum
nTPM: 483.0
Samples: 4

Max nTPM: 606.9
Min nTPM: 413.4
Sample A Female 606.9
Sample B Female 413.4
Sample C Male 483.2
Sample D Male 428.4
Dorsal hippocampus
nTPM: 556.9
Samples: 4

Max nTPM: 741.9
Min nTPM: 400.4
Sample A Female 741.9
Sample B Female 581.3
Sample C Male 503.8
Sample D Male 400.4
Entorhinal cortex
nTPM: 518.7
Samples: 4

Max nTPM: 636.5
Min nTPM: 470.6
Sample A Female 636.5
Sample B Female 489.9
Sample C Male 477.7
Sample D Male 470.6
Ventral hippocampus
nTPM: 546.6
Samples: 4

Max nTPM: 638.9
Min nTPM: 319.4
Sample A Female 623.6
Sample B Female 319.4
Sample C Male 638.9
Sample D Male 604.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

644.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 644.8
Samples: 4

Max nTPM: 695.9
Min nTPM: 602.3
Sample A Male 603.1
Sample B Male 677.9
Sample C Female 602.3
Sample D Female 695.9
Hippocampal formation
nTPM: 627.4
Samples: 4

Max nTPM: 643.8
Min nTPM: 618.7
Sample A Male 643.8
Sample B Male 625.4
Sample C Female 618.7
Sample D Female 621.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

18.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 18.7
68924503 Antisense, RP_050303_02_E02, Mouse strain C57BL/6J (56 days, male) 18.7

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