We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
COPE
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • COPE
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:146.3 nTPM
FANTOM5:139.6 Scaled Tags Per Million
Pig:50.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA041605Antibody HPA043576Antibody CAB034345
Glial cells MediumNot detectedNot detected
Neuronal cells MediumLowMedium






CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 146.3
Samples: 246

Max nTPM: 349.3
Min nTPM: 55.8
Std nTPM: 38.2
Median nTPM: 140.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 349.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 298.6
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 272.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 268.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 243.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 242.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 241.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 234.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 233.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 232.5
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 229.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 221.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 218.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 215.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 213.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 205.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 204.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 203.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 202.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 198.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 191.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 189.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 188.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 187.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 186.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 186.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 185.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 184.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 183.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 182.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 182.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 182.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 180.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 180.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 180.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 179.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 179.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 179.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 178.9
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 178.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 175.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 175.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 174.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 174.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 174.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 172.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 171.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 171.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 170.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 170.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 170.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 169.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 169.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 168.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 168.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 167.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 167.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 166.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 165.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 165.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 164.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 164.4
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 164.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 164.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 164.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 163.4
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 162.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 162.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 162.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 161.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 160.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 159.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 159.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 159.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 159.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 158.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 158.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 157.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 157.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 157.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 156.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 155.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 155.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 155.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 155.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 155.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 154.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 153.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 153.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 152.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 152.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 152.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 152.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 151.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 151.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 150.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 150.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 150.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 149.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 149.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 148.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 148.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 148.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 147.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 146.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 146.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 146.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 146.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 146.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 145.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 144.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 144.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 143.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 143.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 142.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 142.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 142.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 142.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 142.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 142.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 141.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 140.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 140.8
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 140.2
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 139.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 139.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 139.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 138.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 138.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 138.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 138.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 138.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 137.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 137.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 137.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 136.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 135.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 135.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 135.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 135.0
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 135.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 134.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 133.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 133.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 133.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 132.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 132.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 132.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 131.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 130.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 130.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 130.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 130.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 130.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 130.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 130.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 129.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 128.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 128.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 127.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 127.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 126.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 125.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 125.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 125.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 125.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 125.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 124.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 124.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 124.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 124.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 123.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 123.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 123.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 123.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 123.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 122.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 122.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 122.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 122.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 121.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 121.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 121.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 120.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 120.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 120.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 119.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 119.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 118.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 118.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 118.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 118.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 118.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 118.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 118.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 117.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 117.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 116.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 116.5
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 116.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 115.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 115.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 115.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 115.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 115.2
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 115.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 114.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 114.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 114.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 113.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 113.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 113.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 112.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 112.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 112.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 111.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 111.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 111.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 110.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 110.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 110.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 109.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 109.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 108.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 108.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 107.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 104.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 103.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 103.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 101.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 101.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 99.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 99.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 98.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 97.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 95.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 94.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 93.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 92.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 90.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 86.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 80.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 78.5
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 75.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 68.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 55.8
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

139.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 139.6
FF:10164-103B2 76 years, female 139.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

50.7
Pig sample Sample description nTPM
Caudate
nTPM: 50.8
Samples: 4

Max nTPM: 57.1
Min nTPM: 44.1
Sample A Female 46.9
Sample B Female 54.9
Sample C Male 57.1
Sample D Male 44.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org