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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:166.2 nTPM
HPA Brain:130.1 nTPM
GTEx:166.2 nTPM
FANTOM5:87.7 Scaled Tags Per Million
Pig:100.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

130.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 129.0
1981 Female, age 72, midline 168.0
2565 Male, age 75, midline 142.9
2194 Female, age 79, both hemispheres 123.9
2816 Male, age 47, midline 118.3
2048 Male, age 55, midline 91.8
Cervical spinal cord, dorsal horn
nTPM: 130.1
2173 Female, age 72, unknown 163.5
2296 Male, age 66, both hemispheres 152.5
2069 Male, age 47, both hemispheres 138.3
2721 Male, age 90, both hemispheres 111.7
2297 Male, age 75, both hemispheres 108.7
1877 Male, age 55, unknown 106.0
Cervical spinal cord, ventral horn
nTPM: 128.4
2098 Female, age 72, unknown 179.4
2809 Male, age 90, both hemispheres 134.6
2480 Male, age 75, both hemispheres 126.6
2295 Male, age 66, both hemispheres 123.7
2068 Male, age 55, unknown 119.5
2820 Female, age 79, both hemispheres 86.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

166.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 166.2
Samples: 159

Max nTPM: 265.8
Min nTPM: 100.3
Std nTPM: 33.1
Median nTPM: 163.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 265.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 237.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 234.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 233.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 233.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 227.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 226.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 225.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 223.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 222.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 220.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 219.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 219.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 219.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 218.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 215.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 213.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 212.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 210.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 210.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 209.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 207.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 205.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 204.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 203.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 203.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 203.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 201.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 201.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 200.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 198.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 195.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 194.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 193.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 192.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 192.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 192.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 191.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 189.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 189.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 189.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 188.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 188.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 186.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 185.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 184.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 184.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 183.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 183.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 183.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 182.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 180.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 179.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 179.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 178.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 176.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 175.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 174.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 174.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 172.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 171.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 171.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 170.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 170.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 170.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 169.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 169.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 168.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 168.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 167.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 167.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 166.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 166.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 165.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 165.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 165.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 165.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 164.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 163.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 163.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 163.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 162.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 162.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 161.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 160.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 160.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 159.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 157.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 156.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 156.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 155.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 155.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 155.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 155.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 153.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 151.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 151.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 151.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 151.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 151.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 151.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 150.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 149.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 149.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 148.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 148.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 147.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 147.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 147.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 146.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 146.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 146.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 146.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 145.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 144.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 143.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 143.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 143.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 141.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 141.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 140.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 139.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 139.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 137.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 137.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 136.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 135.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 135.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 134.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 133.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 133.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 133.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 132.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 132.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 132.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 130.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 129.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 129.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 127.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 126.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 126.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 126.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 126.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 126.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 126.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 124.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 124.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 123.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 123.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 122.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 120.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 119.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 118.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 115.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 113.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 103.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 103.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 102.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 100.3
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

87.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 87.7
FF:10181-103D1 60 years, female 87.7
FF:10159-103A6 76 years, female 87.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 84.8
Samples: 4

Max nTPM: 102.2
Min nTPM: 76.9
Sample A Female 76.9
Sample B Female 78.6
Sample C Male 102.2
Sample D Male 81.3
Ventral spinal cord
nTPM: 100.4
Samples: 4

Max nTPM: 105.1
Min nTPM: 90.5
Sample A Female 90.5
Sample B Female 102.9
Sample C Male 103.2
Sample D Male 105.1

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