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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:95.3 nTPM
HPA Brain:103.5 nTPM
GTEx:95.3 nTPM
FANTOM5:273.4 Scaled Tags Per Million
Pig:98.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

103.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 103.5
2048 Male, age 55, midline 148.5
1981 Female, age 72, midline 123.1
2816 Male, age 47, midline 93.6
2194 Female, age 79, both hemispheres 76.8
2565 Male, age 75, midline 75.6
Cervical spinal cord, dorsal horn
nTPM: 101.6
2173 Female, age 72, unknown 120.6
2296 Male, age 66, both hemispheres 113.4
2069 Male, age 47, both hemispheres 101.3
2721 Male, age 90, both hemispheres 100.1
1877 Male, age 55, unknown 97.2
2297 Male, age 75, both hemispheres 77.1
Cervical spinal cord, ventral horn
nTPM: 97.0
2809 Male, age 90, both hemispheres 133.2
2098 Female, age 72, unknown 120.5
2295 Male, age 66, both hemispheres 94.9
2480 Male, age 75, both hemispheres 89.7
2068 Male, age 55, unknown 80.6
2820 Female, age 79, both hemispheres 63.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 95.3
Samples: 159

Max nTPM: 201.4
Min nTPM: 50.7
Std nTPM: 25.3
Median nTPM: 90.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 201.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 159.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 154.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 153.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 152.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 145.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 145.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 144.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 141.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 141.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 140.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 138.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 135.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 134.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 134.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 133.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 132.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 131.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 130.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 130.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 129.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 126.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 126.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 121.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 120.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 119.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 118.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 117.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 117.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 116.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 115.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 113.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 112.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 112.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 112.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 111.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 109.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 109.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 109.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 109.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 109.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 108.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 108.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 106.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 106.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 106.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 104.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 104.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 103.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 103.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 103.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 103.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 103.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 103.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 103.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 102.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 102.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 102.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 101.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 99.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 99.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 99.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 96.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 96.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 95.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 95.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 95.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 95.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 94.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 94.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 94.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 94.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 92.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 92.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 91.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 91.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 90.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 90.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 90.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 90.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 89.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 89.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 88.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 88.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 88.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 87.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 87.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 87.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 86.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 86.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 86.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 85.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 85.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 85.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 84.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 84.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 84.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 83.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 83.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 83.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 83.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 83.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 82.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 82.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 82.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 82.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 81.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 81.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 81.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 81.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 81.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 80.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 80.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 79.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 79.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 78.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 78.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 78.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 77.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 77.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 77.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 76.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 76.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 75.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 75.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 75.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 75.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 74.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 74.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 74.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 73.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 73.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 72.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 72.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 72.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 71.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 71.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 70.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 70.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 70.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 69.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 69.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 69.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 68.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 67.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 65.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 65.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 65.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 63.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 61.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 61.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 58.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 58.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 56.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 56.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 51.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 51.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 51.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 50.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

273.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 273.4
FF:10159-103A6 76 years, female 335.1
FF:10181-103D1 60 years, female 211.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 77.9
Samples: 4

Max nTPM: 92.5
Min nTPM: 71.5
Sample A Female 73.7
Sample B Female 92.5
Sample C Male 71.5
Sample D Male 73.8
Ventral spinal cord
nTPM: 98.1
Samples: 4

Max nTPM: 107.9
Min nTPM: 82.9
Sample A Female 95.6
Sample B Female 107.9
Sample C Male 82.9
Sample D Male 106.0

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