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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:353.0 nTPM
HPA Brain:226.4 nTPM
GTEx:353.0 nTPM
FANTOM5:91.7 Scaled Tags Per Million
Pig:96.6 nTPM
Mouse:406.1 nTPM
Allen mouse:25.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

226.4
Sample id Sample description nTPM
Amygdala
nTPM: 226.4
2814 Male, age 76, right hemisphere 255.7
1987 Female, age 91, left hemisphere 238.1
2514 Male, age 75, right hemisphere 234.5
2695 Female, age 67, right hemisphere 224.0
2517 Female, age 94, left hemisphere 179.6
Basal amygdala
nTPM: 166.8
2110 Male, age 80, left hemisphere 199.8
1955 Male, age 76, both hemispheres 194.5
2609 Male, age 75, right hemisphere 194.1
2243 Female, age 91, right hemisphere 167.2
2685 Female, age 94, left hemisphere 143.3
2827 Female, age 67, right hemisphere 101.9
Central amygdala
nTPM: 199.8
1905 Male, age 76, both hemispheres 251.2
2515 Male, age 75, right hemisphere 232.2
2826 Female, age 94, left hemisphere 181.6
2239 Male, age 80, left hemisphere 175.5
2701 Female, age 91, right hemisphere 158.5
Corticomedial amygdala
nTPM: 176.7
2428 Male, age 75, right hemisphere 232.5
2829 Male, age 80, left hemisphere 205.0
2242 Female, age 91, right hemisphere 175.8
2429 Female, age 94, left hemisphere 175.2
2240 Male, age 76, both hemispheres 158.2
2535 Female, age 67, right hemisphere 113.6
Lateral amygdala
nTPM: 179.5
1883 Male, age 76, both hemispheres 223.1
2516 Male, age 75, right hemisphere 218.2
2534 Female, age 94, left hemisphere 190.1
2255 Female, age 91, right hemisphere 167.9
2256 Male, age 80, left hemisphere 159.4
2830 Female, age 67, right hemisphere 118.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

353.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 353.0
Samples: 152

Max nTPM: 1220.9
Min nTPM: 172.1
Std nTPM: 145.5
Median nTPM: 329.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1220.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 934.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 932.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 904.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 746.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 676.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 651.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 620.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 589.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 563.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 559.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 558.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 491.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 491.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 483.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 468.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 457.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 449.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 445.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 437.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 436.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 430.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 425.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 424.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 423.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 420.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 415.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 415.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 409.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 400.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 396.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 394.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 391.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 387.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 383.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 382.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 379.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 378.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 378.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 378.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 376.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 375.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 369.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 369.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 368.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 367.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 366.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 364.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 362.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 361.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 361.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 360.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 357.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 357.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 356.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 355.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 355.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 353.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 353.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 353.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 351.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 350.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 349.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 347.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 346.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 346.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 345.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 342.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 340.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 340.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 339.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 335.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 333.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 333.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 331.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 331.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 327.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 324.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 320.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 319.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 319.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 318.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 316.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 313.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 311.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 310.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 309.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 309.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 308.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 306.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 306.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 306.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 303.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 302.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 301.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 301.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 300.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 300.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 300.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 299.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 298.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 297.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 296.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 295.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 293.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 291.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 287.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 284.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 283.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 281.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 281.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 279.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 279.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 278.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 275.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 274.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 274.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 270.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 266.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 265.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 265.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 263.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 260.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 259.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 256.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 250.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 248.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 247.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 245.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 240.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 240.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 237.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 235.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 230.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 229.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 228.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 228.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 221.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 218.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 213.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 210.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 208.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 207.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 203.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 196.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 195.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 190.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 186.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 182.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 175.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 173.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 172.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

91.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 91.7
FF:10151-102I7 76 years, female 91.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.6
Pig sample Sample description nTPM
Amygdala
nTPM: 96.6
Samples: 4

Max nTPM: 114.4
Min nTPM: 81.4
Sample A Female 114.4
Sample B Female 101.0
Sample C Male 89.7
Sample D Male 81.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

406.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 406.2
Samples: 4

Max nTPM: 469.1
Min nTPM: 371.9
Sample A Male 400.7
Sample B Male 371.9
Sample C Female 469.1
Sample D Female 382.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

25.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 25.2
69262287 Antisense, RP_050303_01_F04, Mouse strain C57BL/6J (56 days, male) 28.5
74272036 Antisense, RP_060202_01_A03, Mouse strain C57BL/6J (56 days, male) 22.0

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