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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:283.9 nTPM
HPA Brain:296.2 nTPM
GTEx:283.9 nTPM
FANTOM5:128.3 Scaled Tags Per Million
Pig:175.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

296.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 272.2
1981 Female, age 72, midline 411.6
2194 Female, age 79, both hemispheres 251.4
2565 Male, age 75, midline 248.8
2048 Male, age 55, midline 231.4
2816 Male, age 47, midline 217.9
Cervical spinal cord, dorsal horn
nTPM: 296.2
2173 Female, age 72, unknown 436.6
2069 Male, age 47, both hemispheres 341.3
2296 Male, age 66, both hemispheres 318.8
2297 Male, age 75, both hemispheres 249.6
1877 Male, age 55, unknown 229.6
2721 Male, age 90, both hemispheres 201.2
Cervical spinal cord, ventral horn
nTPM: 283.0
2098 Female, age 72, unknown 406.8
2809 Male, age 90, both hemispheres 324.4
2480 Male, age 75, both hemispheres 276.3
2068 Male, age 55, unknown 268.1
2295 Male, age 66, both hemispheres 250.0
2820 Female, age 79, both hemispheres 172.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

283.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 283.9
Samples: 159

Max nTPM: 503.5
Min nTPM: 147.1
Std nTPM: 55.8
Median nTPM: 279.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 503.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 467.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 463.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 459.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 446.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 405.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 403.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 385.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 378.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 372.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 368.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 367.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 367.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 357.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 356.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 353.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 352.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 349.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 346.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 345.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 345.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 341.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 334.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 334.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 333.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 331.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 331.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 330.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 328.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 324.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 318.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 318.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 315.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 313.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 312.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 310.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 309.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 309.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 309.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 307.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 304.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 302.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 302.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 301.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 301.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 300.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 300.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 299.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 298.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 298.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 296.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 296.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 296.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 296.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 296.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 295.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 294.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 292.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 292.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 292.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 292.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 292.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 291.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 290.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 290.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 287.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 286.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 286.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 286.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 285.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 285.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 284.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 284.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 284.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 283.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 283.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 282.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 281.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 280.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 279.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 279.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 274.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 273.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 273.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 273.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 272.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 272.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 269.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 269.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 268.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 267.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 266.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 265.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 264.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 262.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 262.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 262.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 262.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 261.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 259.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 259.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 259.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 258.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 258.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 257.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 257.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 256.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 255.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 253.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 253.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 253.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 252.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 251.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 250.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 249.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 249.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 248.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 247.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 246.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 245.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 244.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 244.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 243.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 241.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 240.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 239.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 239.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 238.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 238.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 236.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 235.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 233.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 231.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 231.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 230.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 230.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 229.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 228.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 227.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 226.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 226.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 225.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 224.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 222.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 222.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 222.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 221.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 220.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 218.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 216.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 214.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 214.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 209.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 209.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 208.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 206.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 194.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 192.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 147.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

128.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 128.3
FF:10181-103D1 60 years, female 174.0
FF:10159-103A6 76 years, female 82.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

175.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 155.0
Samples: 4

Max nTPM: 192.5
Min nTPM: 133.1
Sample A Female 133.3
Sample B Female 161.1
Sample C Male 192.5
Sample D Male 133.1
Ventral spinal cord
nTPM: 175.7
Samples: 4

Max nTPM: 209.9
Min nTPM: 144.6
Sample A Female 144.6
Sample B Female 209.9
Sample C Male 185.9
Sample D Male 162.5

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