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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:508.6 nTPM
HPA Brain:429.3 nTPM
GTEx:508.6 nTPM
FANTOM5:837.8 Scaled Tags Per Million
Pig:148.5 nTPM
Mouse:8.2 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

429.3
Sample id Sample description nTPM
Amygdala
nTPM: 429.3
2695 Female, age 67, right hemisphere 496.7
2814 Male, age 76, right hemisphere 475.5
1987 Female, age 91, left hemisphere 467.1
2514 Male, age 75, right hemisphere 372.4
2517 Female, age 94, left hemisphere 334.8
Basal amygdala
nTPM: 354.5
2609 Male, age 75, right hemisphere 429.8
1955 Male, age 76, both hemispheres 417.2
2243 Female, age 91, right hemisphere 390.2
2110 Male, age 80, left hemisphere 354.4
2827 Female, age 67, right hemisphere 276.7
2685 Female, age 94, left hemisphere 258.5
Central amygdala
nTPM: 395.6
2515 Male, age 75, right hemisphere 493.5
1905 Male, age 76, both hemispheres 407.8
2239 Male, age 80, left hemisphere 384.6
2826 Female, age 94, left hemisphere 381.9
2701 Female, age 91, right hemisphere 310.1
Corticomedial amygdala
nTPM: 325.5
2829 Male, age 80, left hemisphere 370.3
2242 Female, age 91, right hemisphere 360.1
2240 Male, age 76, both hemispheres 347.0
2428 Male, age 75, right hemisphere 345.4
2535 Female, age 67, right hemisphere 311.5
2429 Female, age 94, left hemisphere 218.4
Lateral amygdala
nTPM: 339.7
2256 Male, age 80, left hemisphere 438.0
2534 Female, age 94, left hemisphere 347.8
1883 Male, age 76, both hemispheres 334.5
2516 Male, age 75, right hemisphere 329.3
2830 Female, age 67, right hemisphere 295.0
2255 Female, age 91, right hemisphere 293.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

508.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 508.6
Samples: 152

Max nTPM: 6452.4
Min nTPM: 70.1
Std nTPM: 770.2
Median nTPM: 274.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 6452.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 3756.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 3249.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3152.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 2527.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2491.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 2432.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 2029.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1940.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1778.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1474.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1383.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1157.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1084.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 960.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 887.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 859.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 838.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 769.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 753.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 644.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 602.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 592.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 575.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 550.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 540.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 534.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 527.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 516.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 509.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 506.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 497.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 490.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 482.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 482.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 479.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 462.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 456.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 447.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 441.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 433.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 428.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 422.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 415.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 410.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 400.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 400.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 395.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 383.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 378.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 375.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 373.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 368.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 364.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 363.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 360.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 347.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 337.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 336.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 335.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 333.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 330.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 329.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 319.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 311.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 305.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 301.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 296.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 296.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 293.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 290.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 284.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 281.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 279.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 277.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 274.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 274.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 274.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 273.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 268.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 266.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 265.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 260.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 260.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 258.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 258.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 257.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 254.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 254.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 251.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 248.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 248.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 245.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 240.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 239.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 238.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 230.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 229.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 228.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 226.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 223.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 217.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 217.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 216.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 215.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 213.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 210.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 209.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 209.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 208.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 204.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 204.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 203.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 192.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 187.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 186.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 184.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 183.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 181.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 179.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 176.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 176.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 176.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 173.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 172.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 172.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 171.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 167.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 163.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 161.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 161.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 160.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 159.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 157.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 149.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 148.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 142.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 137.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 130.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 130.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 128.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 127.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 122.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 113.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 109.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 109.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 108.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 100.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 99.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 93.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 78.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 70.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

837.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 837.8
FF:10151-102I7 76 years, female 837.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.5
Pig sample Sample description nTPM
Amygdala
nTPM: 148.5
Samples: 4

Max nTPM: 196.0
Min nTPM: 125.2
Sample A Female 196.0
Sample B Female 144.6
Sample C Male 128.2
Sample D Male 125.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 8.2
Samples: 4

Max nTPM: 11.6
Min nTPM: 5.3
Sample A Male 7.2
Sample B Male 5.3
Sample C Female 11.6
Sample D Female 8.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
73514683 Antisense, RP_051121_02_H03, Mouse strain C57BL/6J (56 days, male) 0.0
74363357 Antisense, RP_051121_02_H03, Mouse strain C57BL/6J (56 days, male) 0.0

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