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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:499.9 nTPM
FANTOM5:861.7 Scaled Tags Per Million
Pig:278.6 nTPM
Mouse:9.5 nTPM
Allen mouse:0.0 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

499.9
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 407.4
2032 Female, age 42, unknown 480.6
2396 Male, age 61, right hemisphere 426.9
2497 Male, age 66, unknown 314.8
Centromedial thalamic nucleus
nTPM: 420.2
2279 Female, age 85, left hemisphere 603.2
2401 Male, age 76, right hemisphere 237.1
Habenula
nTPM: 435.1
2276 Male, age 66, unknown 511.8
2203 Male, age 61, left hemisphere 435.6
1957 Male, age 80, both hemispheres 423.1
2252 Male, age 62, unknown 370.0
Lateral geniculate body
nTPM: 423.5
2035 Female, age 72, unknown 516.3
2857 Male, age 74, right hemisphere 441.7
1953 Male, age 62, unknown 428.3
2399 Male, age 61, left hemisphere 424.2
2575 Female, age 94, right hemisphere 417.1
2106 Female, age 67, right hemisphere 390.6
2841 Male, age 80, both hemispheres 389.7
2659 Male, age 66, unknown 379.8
Lateral thalamic nuclei
nTPM: 459.3
2573 Female, age 94, left hemisphere 604.0
1903 Male, age 76, left hemisphere 500.1
2577 Male, age 74, both hemispheres 441.9
2661 Female, age 72, unknown 427.3
2765 Female, age 67, both hemispheres 323.3
Medial dorsal thalamic nucleus
nTPM: 447.0
2572 Female, age 94, right hemisphere 784.4
1810 Male, age 48, unknown 514.1
1930 Female, age 42, unknown 509.4
2498 Male, age 66, unknown 474.8
2576 Male, age 74, both hemispheres 448.9
1971 Male, age 61, right hemisphere 420.5
2283 Male, age 80, right hemisphere 418.2
2039 Female, age 72, unknown 405.7
2026 Male, age 62, unknown 403.4
2492 Male, age 75, right hemisphere 373.0
2402 Female, age 67, both hemispheres 363.4
1859 Male, age 76, both hemispheres 355.6
2660 Female, age 72, unknown 339.1
Medial geniculate body
nTPM: 438.5
2650 Female, age 94, left hemisphere 565.0
2049 Male, age 76, both hemispheres 546.0
2207 Male, age 80, right hemisphere 544.5
2217 Female, age 72, unknown 402.4
1811 Female, age 42, unknown 356.7
2657 Male, age 74, right hemisphere 345.7
2571 Male, age 75, right hemisphere 309.2
Nucleus reuniens
nTPM: 353.7
2205 Male, age 80, left hemisphere 423.5
2212 Female, age 67, left hemisphere 362.1
2210 Female, age 85, left hemisphere 275.7
Nucleus rhomboideus
nTPM: 421.6
2213 Female, age 67, left hemisphere 490.4
2206 Male, age 80, both hemispheres 434.0
2280 Female, age 85, left hemisphere 340.4
Posterior thalamic nucleus
nTPM: 499.9
2649 Female, age 94, both hemispheres 773.0
2495 Female, age 67, right hemisphere 456.7
2266 Male, age 76, right hemisphere 392.6
2655 Male, age 74, right hemisphere 377.4
Pulvinar
nTPM: 426.3
1899 Female, age 42, unknown 488.4
1972 Male, age 62, unknown 484.1
2582 Female, age 72, unknown 482.4
1932 Male, age 80, right hemisphere 481.5
2724 Male, age 74, right hemisphere 413.8
2499 Male, age 66, unknown 408.7
2398 Male, age 61, left hemisphere 388.8
2496 Female, age 67, right hemisphere 382.8
1929 Male, age 48, unknown 368.7
2214 Male, age 76, right hemisphere 363.6
Subthalamic nucleus
nTPM: 327.2
2282 Male, age 61, both hemispheres 460.5
2275 Male, age 66, unknown 401.1
2406 Female, age 72, unknown 383.0
2124 Male, age 62, unknown 328.6
2779 Female, age 42, unknown 306.8
2216 Male, age 48, unknown 283.3
2658 Male, age 74, both hemispheres 236.7
2056 Female, age 72, unknown 217.6
Ventral posterolateral thalamic nucleus
nTPM: 369.9
2197 Male, age 80, both hemispheres 477.9
2397 Male, age 61, right hemisphere 442.6
2578 Male, age 74, both hemispheres 390.2
2581 Female, age 72, unknown 332.7
2570 Male, age 75, right hemisphere 288.6
2740 Male, age 76, right hemisphere 287.3
Ventral posteromedial thalamic nucleus
nTPM: 432.6
2653 Male, age 74, both hemispheres 482.5
2758 Male, age 80, both hemispheres 472.5
2202 Male, age 61, left hemisphere 472.2
2127 Male, age 76, right hemisphere 467.4
2281 Male, age 75, right hemisphere 268.3
Ventral thalamic nuclei
nTPM: 416.2
2204 Male, age 80, both hemispheres 566.6
1912 Female, age 42, unknown 457.8
2858 Female, age 72, unknown 448.8
1845 Male, age 48, unknown 448.5
1860 Male, age 76, both hemispheres 417.1
2580 Male, age 66, unknown 374.6
2652 Male, age 74, left hemisphere 364.2
2285 Male, age 62, unknown 348.8
2291 Female, age 72, unknown 319.6
Zona incerta
nTPM: 313.9
2208 Male, age 80, right hemisphere 499.5
2663 Female, age 72, unknown 314.0
2403 Male, age 62, unknown 287.8
2215 Male, age 66, unknown 276.7
2822 Male, age 74, right hemisphere 191.4

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

861.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 861.7
FF:10154-103A1 76 years, female 861.7

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

278.6
Pig sample Sample description nTPM
Thalamus
nTPM: 278.7
Samples: 4

Max nTPM: 394.5
Min nTPM: 222.0
Sample A Female 394.5
Sample B Female 230.5
Sample C Male 267.6
Sample D Male 222.0

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9.5
Mouse sample Sample description nTPM
Thalamus
nTPM: 9.5
Samples: 4

Max nTPM: 10.5
Min nTPM: 8.4
Sample A Male 8.4
Sample B Male 9.7
Sample C Female 10.5
Sample D Female 9.5

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 0.0
73514683 Antisense, RP_051121_02_H03, Mouse strain C57BL/6J (56 days, male) 0.0
74363357 Antisense, RP_051121_02_H03, Mouse strain C57BL/6J (56 days, male) 0.0

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