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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
165.4
nTPM
FANTOM5:
87.1
Scaled Tags Per Million
Pig:
23.9
nTPM
Allen mouse:
2.2
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
165.4
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 143.2
2301
Female, age 85, both hemispheres
166.8
2090
Male, age 80, both hemispheres
145.7
2188
Female, age 91, both hemispheres
145.2
1984
Male, age 76, both hemispheres
115.1
Dorsal cochlear nucleus nTPM: 150.1
2802
Male, age 74, right hemisphere
166.5
2378
Male, age 80, both hemispheres
152.2
2370
Male, age 61, both hemispheres
150.5
2187
Female, age 91, both hemispheres
149.2
2058
Male, age 76, both hemispheres
131.9
Dorsal tegmental nucleus nTPM: 148.7
2358
Male, age 61, both hemispheres
167.0
2083
Male, age 80, both hemispheres
153.0
2326
Male, age 74, both hemispheres
139.8
1936
Male, age 76, left hemisphere
135.2
Dorsolateral tegmental area nTPM: 129.1
2654
Male, age 80, both hemispheres
149.2
2337
Male, age 61, both hemispheres
128.1
2751
Female, age 85, both hemispheres
125.1
2141
Male, age 76, both hemispheres
122.4
2360
Male, age 74, both hemispheres
120.8
Kolliker-Fuse nucleus nTPM: 154.2
2793
Female, age 91, left hemisphere
179.7
2163
Male, age 80, both hemispheres
144.6
2315
Male, age 76, right hemisphere
138.3
Lateral lemniscal nuclei nTPM: 139.9
2036
Male, age 80, both hemispheres
146.0
2320
Female, age 91, left hemisphere
145.4
2169
Male, age 76, both hemispheres
141.3
2746
Female, age 85, left hemisphere
135.5
2453
Male, age 74, right hemisphere
131.4
Lateral parabrachial nucleus nTPM: 140.7
2790
Male, age 61, both hemispheres
149.1
2013
Male, age 80, both hemispheres
143.2
2792
Male, age 76, both hemispheres
135.4
2139
Female, age 85, right hemisphere
135.3
Lateral vestibular nucleus nTPM: 165.4
2311
Male, age 80, both hemispheres
171.6
2184
Male, age 76, both hemispheres
159.2
Locus coeruleus nTPM: 135.4
2720
Male, age 74, both hemispheres
151.2
2162
Male, age 80, both hemispheres
142.4
2123
Female, age 91, both hemispheres
139.2
2317
Female, age 72, unknown
137.2
1980
Male, age 76, both hemispheres
135.5
2014
Male, age 55, unknown
134.2
2788
Male, age 74, unknown
107.8
Medial parabrachial nucleus nTPM: 145.2
2156
Male, age 61, both hemispheres
151.5
2170
Female, age 91, both hemispheres
147.6
2854
Male, age 80, both hemispheres
147.2
2786
Male, age 76, both hemispheres
143.2
2463
Female, age 85, right hemisphere
136.4
Medial periolivary nuclei nTPM: 140.3
2458
Female, age 91, both hemispheres
145.2
2081
Male, age 80, both hemispheres
143.7
2171
Female, age 85, both hemispheres
143.0
2063
Male, age 76, both hemispheres
140.0
2791
Male, age 74, right hemisphere
129.7
Motor facial nucleus nTPM: 150.3
2697
Female, age 85, both hemispheres
162.1
2795
Female, age 91, both hemispheres
160.3
2126
Male, age 61, both hemispheres
157.8
2327
Male, age 80, both hemispheres
146.3
2062
Male, age 76, both hemispheres
144.0
2365
Male, age 74, right hemisphere
131.4
Motor trigeminal nucleus nTPM: 142.2
2321
Female, age 91, both hemispheres
149.7
2560
Male, age 74, both hemispheres
148.5
2335
Male, age 61, both hemispheres
139.3
2309
Male, age 76, both hemispheres
138.4
2079
Male, age 80, both hemispheres
135.1
Nuclei of the trapezoid body nTPM: 141.1
2166
Male, age 80, both hemispheres
150.4
1983
Male, age 76, both hemispheres
141.3
2368
Female, age 91, both hemispheres
140.1
2735
Female, age 85, both hemispheres
137.9
2159
Male, age 61, both hemispheres
135.8
Nucleus raphe magnus nTPM: 146.3
2051
Male, age 76, both hemispheres
160.0
2172
Female, age 85, both hemispheres
157.3
2328
Male, age 80, both hemispheres
150.2
2459
Female, age 91, both hemispheres
144.1
2160
Male, age 61, both hemispheres
137.6
2455
Male, age 74, both hemispheres
128.5
Paramedian reticular nucleus nTPM: 129.7
2313
Male, age 61, both hemispheres
139.9
2057
Male, age 80, both hemispheres
133.3
2050
Female, age 85, both hemispheres
130.1
2052
Male, age 76, both hemispheres
115.4
Pedunculopontine tegmental nucleus nTPM: 122.3
2334
Male, age 80, both hemispheres
134.7
1921
Female, age 85, both hemispheres
119.0
2338
Male, age 61, both hemispheres
113.2
Pontine nuclei nTPM: 144.3
2787
Female, age 85, both hemispheres
174.8
1968
Male, age 76, left hemisphere
161.4
2115
Male, age 80, left hemisphere
155.2
1863
Male, age 55, unknown
152.0
2319
Female, age 91, both hemispheres
135.8
2109
Female, age 72, unknown
133.7
2727
Male, age 61, right hemisphere
122.2
2454
Male, age 74, left hemisphere
119.3
Pontine raphe nucleus nTPM: 127.3
2853
Male, age 76, midline
127.7
2122
Female, age 85, midline
127.0
Posteroventral cochlear nucleus nTPM: 135.2
2371
Male, age 61, both hemispheres
153.8
2341
Male, age 80, both hemispheres
136.4
2135
Female, age 91, both hemispheres
135.4
2070
Male, age 76, both hemispheres
132.7
2752
Female, age 85, both hemispheres
117.9
Principal sensory trigeminal nucleus nTPM: 143.5
2324
Male, age 76, both hemispheres
152.0
2367
Female, age 91, left hemisphere
148.5
2158
Male, age 61, both hemispheres
144.1
2008
Male, age 80, left hemisphere
129.1
Reticular pontine nucleus, caudal nTPM: 145.1
2457
Female, age 91, both hemispheres
153.4
2332
Male, age 80, right hemisphere
147.9
2559
Male, age 74, both hemispheres
140.1
2092
Male, age 76, both hemispheres
139.0
Reticular pontine nucleus, oral nTPM: 136.6
2366
Female, age 91, both hemispheres
152.0
2167
Male, age 76, both hemispheres
140.8
1939
Male, age 80, both hemispheres
137.2
2012
Female, age 85, both hemispheres
134.8
2361
Male, age 74, both hemispheres
118.3
Reticulotegmental nucleus nTPM: 143.5
2322
Female, age 91, both hemispheres
153.1
2452
Male, age 74, both hemispheres
147.3
2333
Male, age 80, both hemispheres
143.4
2325
Male, age 76, both hemispheres
130.2
Spinal trigeminal nucleus, oral nTPM: 134.9
2164
Male, age 80, both hemispheres
160.2
1978
Male, age 76, both hemispheres
127.7
2737
Female, age 85, both hemispheres
116.7
Subcoeruleus area nTPM: 134.4
2451
Male, age 74, both hemispheres
144.0
2089
Male, age 76, left hemisphere
141.9
1958
Male, age 80, both hemispheres
131.6
2323
Female, age 91, left hemisphere
128.4
2369
Female, age 85, left hemisphere
126.0
Superior olive nTPM: 142.3
2561
Female, age 91, both hemispheres
160.9
2329
Male, age 80, right hemisphere
152.2
1875
Female, age 85, both hemispheres
139.5
2020
Male, age 76, both hemispheres
138.5
2364
Male, age 74, right hemisphere
120.5
Ventral periolivary nuclei nTPM: 142.2
2130
Female, age 85, both hemispheres
156.1
2165
Male, age 80, both hemispheres
150.7
2794
Female, age 91, left hemisphere
140.9
2023
Male, age 76, both hemispheres
121.1
Ventrolateral tegmental area, A5 NE cell group nTPM: 139.4
2161
Male, age 80, both hemispheres
145.6
2456
Female, age 91, both hemispheres
145.1
1959
Male, age 76, both hemispheres
144.2
2840
Female, age 85, both hemispheres
143.0
2359
Male, age 61, both hemispheres
129.3
2449
Male, age 74, both hemispheres
129.2
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.9
Pig sample
Sample description
nTPM
Pons nTPM: 23.9
Samples: 4
Max nTPM: 28.6
Min nTPM: 21.5
Sample A
Female
28.6
Sample B
Female
21.5
Sample C
Male
21.7
Sample D
Male
23.6
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
