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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:79.2 nTPM
HPA Brain:144.8 nTPM
GTEx:79.2 nTPM
FANTOM5:86.6 Scaled Tags Per Million
Pig:33.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 144.8
2565 Male, age 75, midline 179.6
2816 Male, age 47, midline 151.7
2194 Female, age 79, both hemispheres 139.6
2048 Male, age 55, midline 132.6
1981 Female, age 72, midline 120.7
Cervical spinal cord, dorsal horn
nTPM: 116.5
2296 Male, age 66, both hemispheres 148.3
2173 Female, age 72, unknown 123.6
2721 Male, age 90, both hemispheres 114.5
1877 Male, age 55, unknown 111.3
2069 Male, age 47, both hemispheres 107.1
2297 Male, age 75, both hemispheres 94.4
Cervical spinal cord, ventral horn
nTPM: 144.8
2480 Male, age 75, both hemispheres 164.0
2809 Male, age 90, both hemispheres 157.7
2820 Female, age 79, both hemispheres 154.6
2295 Male, age 66, both hemispheres 135.4
2098 Female, age 72, unknown 129.1
2068 Male, age 55, unknown 128.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 79.2
Samples: 159

Max nTPM: 138.8
Min nTPM: 41.4
Std nTPM: 17.8
Median nTPM: 79.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 138.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 123.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 120.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 118.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 113.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 113.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 111.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 110.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 109.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 109.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 107.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 104.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 104.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 103.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 103.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 102.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 101.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 101.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 101.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 100.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 99.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 97.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 97.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 96.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 96.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 95.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 94.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 94.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 93.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 92.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 92.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 92.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 92.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 91.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 91.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 91.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 91.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 91.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 90.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 90.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 89.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 88.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 88.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 88.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 88.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 87.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 87.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 86.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 86.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 86.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 86.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 86.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 85.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 85.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 85.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 85.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 85.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 84.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 84.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 83.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 83.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 83.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 82.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 82.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 81.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 81.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 81.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 81.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 81.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 81.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 81.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 81.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 80.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 80.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 80.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 80.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 80.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 80.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 79.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 79.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 79.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 78.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 78.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 78.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 78.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 78.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 78.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 77.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 77.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 77.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 76.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 76.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 76.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 76.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 76.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 76.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 75.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 75.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 75.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 74.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 73.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 73.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 73.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 73.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 72.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 72.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 72.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 72.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 72.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 72.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 71.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 71.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 71.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 71.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 70.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 70.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 70.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 69.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 68.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 68.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 67.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 67.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 66.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 66.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 65.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 63.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 63.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 63.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 62.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 62.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 62.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 61.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 61.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 60.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 60.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 58.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 58.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 58.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 57.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 57.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 57.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 56.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 56.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 55.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 53.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 53.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 52.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 51.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 51.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 50.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 49.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 49.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 47.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 46.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 43.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 43.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 42.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 42.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 41.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

86.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 86.6
FF:10159-103A6 76 years, female 93.9
FF:10181-103D1 60 years, female 79.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 26.2
Samples: 4

Max nTPM: 28.8
Min nTPM: 22.6
Sample A Female 28.8
Sample B Female 24.5
Sample C Male 22.6
Sample D Male 28.7
Ventral spinal cord
nTPM: 33.0
Samples: 4

Max nTPM: 37.1
Min nTPM: 31.1
Sample A Female 37.1
Sample B Female 31.1
Sample C Male 31.9
Sample D Male 31.9

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