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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
640.0
Sample id
Sample description
nTPM
Amygdala nTPM: 336.2
2814
Male, age 76, right hemisphere
485.8
2517
Female, age 94, left hemisphere
428.7
1987
Female, age 91, left hemisphere
300.1
2514
Male, age 75, right hemisphere
282.7
2695
Female, age 67, right hemisphere
183.4
Basal amygdala nTPM: 640.0
2685
Female, age 94, left hemisphere
895.0
2827
Female, age 67, right hemisphere
727.1
2243
Female, age 91, right hemisphere
660.6
2110
Male, age 80, left hemisphere
569.8
2609
Male, age 75, right hemisphere
557.0
1955
Male, age 76, both hemispheres
430.5
Central amygdala nTPM: 426.7
2826
Female, age 94, left hemisphere
663.3
2239
Male, age 80, left hemisphere
457.2
1905
Male, age 76, both hemispheres
400.1
2701
Female, age 91, right hemisphere
310.4
2515
Male, age 75, right hemisphere
302.4
Corticomedial amygdala nTPM: 570.4
2535
Female, age 67, right hemisphere
715.6
2242
Female, age 91, right hemisphere
673.5
2829
Male, age 80, left hemisphere
667.9
2429
Female, age 94, left hemisphere
533.9
2428
Male, age 75, right hemisphere
446.9
2240
Male, age 76, both hemispheres
384.6
Lateral amygdala nTPM: 420.7
2534
Female, age 94, left hemisphere
608.9
2256
Male, age 80, left hemisphere
507.1
1883
Male, age 76, both hemispheres
412.2
2255
Female, age 91, right hemisphere
400.8
2830
Female, age 67, right hemisphere
337.2
2516
Male, age 75, right hemisphere
258.0
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
324.6
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 324.6
Samples: 152
Max nTPM: 915.9
Min nTPM: 10.4
Std nTPM: 158.0
Median nTPM: 312.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
915.9
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
682.3
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
657.5
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
651.9
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
650.0
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
637.4
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
635.7
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
604.5
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
587.2
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
585.6
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
581.5
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
578.8
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
575.1
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
566.4
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
565.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
551.7
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
544.3
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
539.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
538.8
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
535.4
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
520.7
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
509.6
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
500.8
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
497.2
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
491.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
483.9
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
483.8
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
481.9
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
473.9
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
458.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
454.1
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
453.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
450.1
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
446.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
441.3
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
438.0
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
433.8
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
417.3
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
416.7
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
415.2
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
410.6
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
409.0
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
408.5
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
406.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
404.9
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
388.1
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
384.9
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
384.1
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
383.7
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
376.2
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
374.3
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
368.8
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
363.4
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
363.4
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
363.1
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
362.0
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
359.0
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
357.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
355.5
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
347.5
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
345.3
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
344.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
340.3
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
340.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
338.3
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
333.6
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
330.4
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
329.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
328.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
326.9
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
325.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
324.2
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
324.0
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
321.8
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
321.1
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
314.6
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
310.7
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
288.9
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
286.8
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
286.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
285.6
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
285.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
283.0
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
280.6
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
275.7
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
272.3
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
270.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
269.7
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
269.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
268.6
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
263.4
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
261.7
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
258.1
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
256.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
254.0
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
251.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
249.1
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
245.6
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
244.9
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
243.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
237.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
235.8
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
229.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
228.4
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
225.6
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
223.4
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
222.1
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
219.5
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
219.1
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
217.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
216.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
213.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
210.7
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
209.7
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
207.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
203.9
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
202.3
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
202.2
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
197.5
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
194.8
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
194.6
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
191.4
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
184.6
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
183.7
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
175.4
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
172.5
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
172.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
170.6
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
165.2
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
163.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
162.4
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
162.1
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
156.7
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
148.9
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
148.0
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
145.9
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
139.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
139.0
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
132.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
131.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
130.2
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
124.8
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
117.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
112.5
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
110.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
98.8
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
81.6
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
71.4
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
62.3
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
50.6
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
33.1
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
10.4
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
163.6
Mouse sample
Sample description
nTPM
Amygdala nTPM: 163.7
Samples: 4
Max nTPM: 181.9
Min nTPM: 148.1
Sample A
Male
148.1
Sample B
Male
167.4
Sample C
Female
181.9
Sample D
Female
157.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
