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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
289.5
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 146.8
2301
Female, age 85, both hemispheres
207.7
1984
Male, age 76, both hemispheres
165.1
2188
Female, age 91, both hemispheres
109.7
2090
Male, age 80, both hemispheres
104.7
Dorsal cochlear nucleus nTPM: 176.7
2802
Male, age 74, right hemisphere
201.7
2370
Male, age 61, both hemispheres
197.5
2058
Male, age 76, both hemispheres
197.1
2187
Female, age 91, both hemispheres
144.9
2378
Male, age 80, both hemispheres
142.0
Dorsal tegmental nucleus nTPM: 173.4
2358
Male, age 61, both hemispheres
193.0
2083
Male, age 80, both hemispheres
187.2
1936
Male, age 76, left hemisphere
174.4
2326
Male, age 74, both hemispheres
138.9
Dorsolateral tegmental area nTPM: 152.4
2141
Male, age 76, both hemispheres
202.8
2654
Male, age 80, both hemispheres
198.4
2751
Female, age 85, both hemispheres
134.9
2360
Male, age 74, both hemispheres
127.6
2337
Male, age 61, both hemispheres
98.1
Kolliker-Fuse nucleus nTPM: 184.6
2163
Male, age 80, both hemispheres
244.4
2793
Female, age 91, left hemisphere
192.3
2315
Male, age 76, right hemisphere
117.3
Lateral lemniscal nuclei nTPM: 245.5
2036
Male, age 80, both hemispheres
290.0
2169
Male, age 76, both hemispheres
269.2
2453
Male, age 74, right hemisphere
264.6
2746
Female, age 85, left hemisphere
205.6
2320
Female, age 91, left hemisphere
198.1
Lateral parabrachial nucleus nTPM: 174.2
2139
Female, age 85, right hemisphere
246.9
2790
Male, age 61, both hemispheres
214.3
2013
Male, age 80, both hemispheres
146.9
2792
Male, age 76, both hemispheres
88.8
Lateral vestibular nucleus nTPM: 219.8
2184
Male, age 76, both hemispheres
257.7
2311
Male, age 80, both hemispheres
181.8
Locus coeruleus nTPM: 289.5
2720
Male, age 74, both hemispheres
382.4
2123
Female, age 91, both hemispheres
334.8
2162
Male, age 80, both hemispheres
293.4
1980
Male, age 76, both hemispheres
288.7
2317
Female, age 72, unknown
262.1
2014
Male, age 55, unknown
249.9
2788
Male, age 74, unknown
215.5
Medial parabrachial nucleus nTPM: 186.6
2156
Male, age 61, both hemispheres
240.5
2854
Male, age 80, both hemispheres
203.4
2786
Male, age 76, both hemispheres
201.0
2170
Female, age 91, both hemispheres
145.2
2463
Female, age 85, right hemisphere
143.2
Medial periolivary nuclei nTPM: 223.2
2171
Female, age 85, both hemispheres
344.8
2063
Male, age 76, both hemispheres
284.3
2791
Male, age 74, right hemisphere
182.2
2458
Female, age 91, both hemispheres
170.5
2081
Male, age 80, both hemispheres
134.3
Motor facial nucleus nTPM: 247.0
2062
Male, age 76, both hemispheres
302.3
2327
Male, age 80, both hemispheres
280.0
2795
Female, age 91, both hemispheres
258.9
2697
Female, age 85, both hemispheres
245.8
2365
Male, age 74, right hemisphere
207.5
2126
Male, age 61, both hemispheres
187.3
Motor trigeminal nucleus nTPM: 205.2
2335
Male, age 61, both hemispheres
226.4
2560
Male, age 74, both hemispheres
217.7
2079
Male, age 80, both hemispheres
213.3
2309
Male, age 76, both hemispheres
212.3
2321
Female, age 91, both hemispheres
156.5
Nuclei of the trapezoid body nTPM: 255.8
2735
Female, age 85, both hemispheres
326.7
2159
Male, age 61, both hemispheres
276.0
1983
Male, age 76, both hemispheres
253.3
2368
Female, age 91, both hemispheres
229.7
2166
Male, age 80, both hemispheres
193.2
Nucleus raphe magnus nTPM: 268.1
2172
Female, age 85, both hemispheres
382.3
2160
Male, age 61, both hemispheres
324.2
2328
Male, age 80, both hemispheres
242.9
2455
Male, age 74, both hemispheres
240.4
2051
Male, age 76, both hemispheres
228.2
2459
Female, age 91, both hemispheres
190.4
Paramedian reticular nucleus nTPM: 211.5
2050
Female, age 85, both hemispheres
263.4
2313
Male, age 61, both hemispheres
256.1
2057
Male, age 80, both hemispheres
203.0
2052
Male, age 76, both hemispheres
123.5
Pedunculopontine tegmental nucleus nTPM: 188.5
2334
Male, age 80, both hemispheres
217.3
1921
Female, age 85, both hemispheres
201.4
2338
Male, age 61, both hemispheres
146.7
Pontine nuclei nTPM: 213.1
2787
Female, age 85, both hemispheres
339.2
1968
Male, age 76, left hemisphere
261.0
2727
Male, age 61, right hemisphere
256.5
1863
Male, age 55, unknown
238.2
2109
Female, age 72, unknown
184.7
2115
Male, age 80, left hemisphere
172.8
2454
Male, age 74, left hemisphere
137.6
2319
Female, age 91, both hemispheres
114.6
Pontine raphe nucleus nTPM: 244.5
2122
Female, age 85, midline
253.4
2853
Male, age 76, midline
235.6
Posteroventral cochlear nucleus nTPM: 145.7
2752
Female, age 85, both hemispheres
266.5
2371
Male, age 61, both hemispheres
181.7
2070
Male, age 76, both hemispheres
170.5
2341
Male, age 80, both hemispheres
73.7
2135
Female, age 91, both hemispheres
36.2
Principal sensory trigeminal nucleus nTPM: 230.9
2158
Male, age 61, both hemispheres
286.6
2324
Male, age 76, both hemispheres
252.6
2008
Male, age 80, left hemisphere
231.6
2367
Female, age 91, left hemisphere
152.8
Reticular pontine nucleus, caudal nTPM: 197.7
2332
Male, age 80, right hemisphere
295.4
2092
Male, age 76, both hemispheres
184.4
2457
Female, age 91, both hemispheres
166.5
2559
Male, age 74, both hemispheres
144.7
Reticular pontine nucleus, oral nTPM: 164.0
2012
Female, age 85, both hemispheres
202.5
2167
Male, age 76, both hemispheres
178.3
2361
Male, age 74, both hemispheres
159.5
1939
Male, age 80, both hemispheres
141.6
2366
Female, age 91, both hemispheres
138.2
Reticulotegmental nucleus nTPM: 214.2
2325
Male, age 76, both hemispheres
250.5
2322
Female, age 91, both hemispheres
213.1
2452
Male, age 74, both hemispheres
197.7
2333
Male, age 80, both hemispheres
195.4
Spinal trigeminal nucleus, oral nTPM: 229.8
2164
Male, age 80, both hemispheres
233.2
2737
Female, age 85, both hemispheres
231.2
1978
Male, age 76, both hemispheres
224.9
Subcoeruleus area nTPM: 200.3
2323
Female, age 91, left hemisphere
271.7
2089
Male, age 76, left hemisphere
220.9
2451
Male, age 74, both hemispheres
206.9
1958
Male, age 80, both hemispheres
204.3
2369
Female, age 85, left hemisphere
97.6
Superior olive nTPM: 209.0
1875
Female, age 85, both hemispheres
242.8
2561
Female, age 91, both hemispheres
227.7
2329
Male, age 80, right hemisphere
226.0
2020
Male, age 76, both hemispheres
188.1
2364
Male, age 74, right hemisphere
160.1
Ventral periolivary nuclei nTPM: 250.2
2130
Female, age 85, both hemispheres
329.9
2165
Male, age 80, both hemispheres
265.0
2794
Female, age 91, left hemisphere
241.1
2023
Male, age 76, both hemispheres
164.8
Ventrolateral tegmental area, A5 NE cell group nTPM: 202.6
2449
Male, age 74, both hemispheres
225.5
2840
Female, age 85, both hemispheres
225.0
2161
Male, age 80, both hemispheres
200.1
1959
Male, age 76, both hemispheres
197.6
2359
Male, age 61, both hemispheres
192.5
2456
Female, age 91, both hemispheres
175.2
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
138.4
Pig sample
Sample description
nTPM
Pons nTPM: 138.5
Samples: 4
Max nTPM: 222.4
Min nTPM: 104.5
Sample A
Female
222.4
Sample B
Female
108.9
Sample C
Male
104.5
Sample D
Male
118.0
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
