MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:86.3 nTPM
HPA Brain:577.3 nTPM
GTEx:86.3 nTPM
FANTOM5:513.7 Scaled Tags Per Million
Pig:226.5 nTPM
Mouse:63.1 nTPM
Allen mouse:13.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 577.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 436.3
2411 Female, age 72, unknown 572.2
1830 Male, age 51, unknown 540.0
2019 Male, age 18, unknown 527.0
1833 Male, age 53, unknown 496.5
1870 Female, age 42, unknown 465.2
2828 Female, age 72, unknown 411.0
2586 Male, age 75, left hemisphere 392.9
2666 Male, age 74, left hemisphere 330.2
2219 Male, age 76, both hemispheres 317.4
1827 Male, age 72, unknown 311.0
Dorsal raphe nucleus
nTPM: 343.4
2750 Male, age 76, both hemispheres 661.8
2016 Female, age 72, unknown 312.2
1828 Male, age 53, unknown 310.5
2047 Male, age 72, unknown 228.4
2298 Female, age 72, unknown 204.2
Inferior colliculus
nTPM: 271.7
1890 Male, age 53, unknown 295.7
1848 Female, age 42, unknown 289.6
2849 Male, age 72, unknown 267.9
2097 Female, age 72, unknown 233.7
Median raphe nucleus
nTPM: 301.0
2220 Male, age 76, midline 301.0
Periaquaductal grey, anterior
nTPM: 280.7
1947 Male, age 18, unknown 296.5
2502 Female, age 75, unknown 290.9
1795 Male, age 51, unknown 254.6
Periaquaductal grey, dorsal
nTPM: 210.0
2464 Female, age 72, unknown 343.2
1831 Male, age 72, unknown 229.7
1840 Male, age 53, unknown 140.7
2850 Male, age 76, both hemispheres 126.5
Periaquaductal grey, lateral
nTPM: 247.8
2272 Male, age 74, both hemispheres 327.0
2053 Male, age 18, unknown 258.3
2140 Male, age 76, both hemispheres 158.1
Pretectal area
nTPM: 306.4
2316 Male, age 76, right hemisphere 473.9
1815 Male, age 53, unknown 378.8
2407 Male, age 75, both hemispheres 372.3
2007 Male, age 72, unknown 338.8
1817 Female, age 42, unknown 308.5
2825 Male, age 18, unknown 286.1
2273 Male, age 74, both hemispheres 277.9
2667 Female, age 75, unknown 276.6
2224 Female, age 72, unknown 237.0
1944 Female, age 72, unknown 210.5
1816 Male, age 51, unknown 209.5
Red nucleus
nTPM: 577.3
2823 Male, age 76, right hemisphere 697.5
2227 Male, age 72, unknown 643.1
2769 Male, age 72, unknown 642.9
1904 Male, age 53, unknown 637.1
2785 Male, age 18, unknown 633.3
1865 Male, age 51, unknown 623.0
2503 Female, age 72, unknown 584.0
2588 Male, age 74, left hemisphere 583.6
1821 Female, age 72, unknown 552.9
2584 Male, age 75, left hemisphere 468.2
1954 Female, age 42, unknown 466.6
2725 Female, age 75, unknown 395.2
Substantia nigra
nTPM: 311.3
2590 Female, age 75, unknown 434.3
2583 Male, age 75, right hemisphere 403.2
1851 Male, age 51, unknown 370.0
1889 Female, age 72, unknown 327.3
2409 Female, age 72, unknown 319.3
1941 Male, age 53, unknown 294.4
2699 Male, age 18, unknown 271.0
1916 Female, age 42, unknown 250.0
2241 Male, age 72, unknown 230.8
2665 Male, age 74, both hemispheres 212.3
Superior colliculus
nTPM: 373.8
1913 Female, age 42, unknown 561.1
1995 Male, age 72, unknown 522.6
1895 Male, age 76, right hemisphere 420.2
2587 Male, age 74, left hemisphere 389.9
1839 Male, age 51, unknown 378.3
2668 Female, age 75, unknown 376.3
1796 Male, age 53, unknown 316.6
2261 Male, age 18, unknown 265.1
2664 Male, age 75, both hemispheres 256.2
2087 Female, age 72, unknown 252.1
Ventral tegmental area
nTPM: 384.1
2223 Female, age 72, unknown 567.0
2410 Female, age 72, unknown 470.9
2021 Male, age 53, unknown 333.8
1942 Male, age 51, unknown 327.8
2218 Male, age 76, both hemispheres 327.4
1915 Female, age 42, unknown 277.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 86.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 86.3
Samples: 139

Max nTPM: 395.1
Min nTPM: 19.6
Std nTPM: 54.8
Median nTPM: 76.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 395.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 302.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 266.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 249.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 216.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 196.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 178.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 171.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 168.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 159.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 156.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 513.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 513.7
FF:10158-103A5 76 years, female 513.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 226.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 222.8
Samples: 4

Max nTPM: 331.4
Min nTPM: 135.9
Sample A Female 223.0
Sample B Female 135.9
Sample C Male 200.9
Sample D Male 331.4
Midbrain
nTPM: 226.5
Samples: 4

Max nTPM: 426.7
Min nTPM: 136.7
Sample A Female 426.7
Sample B Female 174.4
Sample C Male 168.1
Sample D Male 136.7
Periaqueductal gray
nTPM: 130.9
Samples: 3

Max nTPM: 140.2
Min nTPM: 120.3
Sample B Female 140.2
Sample C Male 120.3
Sample D Male 132.2
Superior colliculi
nTPM: 185.4
Samples: 4

Max nTPM: 212.4
Min nTPM: 108.7
Sample A Female 211.3
Sample B Female 108.7
Sample C Male 209.0
Sample D Male 212.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 63.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.1
Samples: 4

Max nTPM: 71.1
Min nTPM: 53.8
Sample A Male 53.8
Sample B Male 58.2
Sample C Female 71.1
Sample D Female 69.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.0
69514530 Antisense, RP_050419_03_E11, Mouse strain C57BL/6J (56 days, male) 13.0

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