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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
562.7
nTPM
FANTOM5:
297.0
Scaled Tags Per Million
Pig:
169.2
nTPM
Allen mouse:
13.8
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
562.7
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 562.7
2301
Female, age 85, both hemispheres
677.2
2090
Male, age 80, both hemispheres
637.0
2188
Female, age 91, both hemispheres
623.0
1984
Male, age 76, both hemispheres
313.4
Dorsal cochlear nucleus nTPM: 460.5
2187
Female, age 91, both hemispheres
555.1
2378
Male, age 80, both hemispheres
463.6
2802
Male, age 74, right hemisphere
446.7
2370
Male, age 61, both hemispheres
426.1
2058
Male, age 76, both hemispheres
411.0
Dorsal tegmental nucleus nTPM: 407.8
2083
Male, age 80, both hemispheres
553.1
2326
Male, age 74, both hemispheres
449.6
1936
Male, age 76, left hemisphere
381.9
2358
Male, age 61, both hemispheres
246.9
Dorsolateral tegmental area nTPM: 433.7
2751
Female, age 85, both hemispheres
598.5
2654
Male, age 80, both hemispheres
509.4
2337
Male, age 61, both hemispheres
468.4
2360
Male, age 74, both hemispheres
316.5
2141
Male, age 76, both hemispheres
276.0
Kolliker-Fuse nucleus nTPM: 452.3
2793
Female, age 91, left hemisphere
616.2
2163
Male, age 80, both hemispheres
438.9
2315
Male, age 76, right hemisphere
301.9
Lateral lemniscal nuclei nTPM: 498.9
2320
Female, age 91, left hemisphere
623.9
2746
Female, age 85, left hemisphere
507.0
2036
Male, age 80, both hemispheres
484.4
2453
Male, age 74, right hemisphere
454.8
2169
Male, age 76, both hemispheres
424.2
Lateral parabrachial nucleus nTPM: 482.0
2792
Male, age 76, both hemispheres
615.5
2013
Male, age 80, both hemispheres
548.6
2139
Female, age 85, right hemisphere
388.6
2790
Male, age 61, both hemispheres
375.2
Lateral vestibular nucleus nTPM: 510.1
2311
Male, age 80, both hemispheres
529.8
2184
Male, age 76, both hemispheres
490.4
Locus coeruleus nTPM: 251.2
2162
Male, age 80, both hemispheres
333.9
2720
Male, age 74, both hemispheres
285.9
2317
Female, age 72, unknown
284.9
2123
Female, age 91, both hemispheres
251.5
2014
Male, age 55, unknown
229.7
1980
Male, age 76, both hemispheres
203.6
2788
Male, age 74, unknown
168.7
Medial parabrachial nucleus nTPM: 506.8
2170
Female, age 91, both hemispheres
636.8
2463
Female, age 85, right hemisphere
558.8
2786
Male, age 76, both hemispheres
482.5
2854
Male, age 80, both hemispheres
454.9
2156
Male, age 61, both hemispheres
401.2
Medial periolivary nuclei nTPM: 460.7
2081
Male, age 80, both hemispheres
630.0
2458
Female, age 91, both hemispheres
531.6
2791
Male, age 74, right hemisphere
429.8
2063
Male, age 76, both hemispheres
371.1
2171
Female, age 85, both hemispheres
341.0
Motor facial nucleus nTPM: 473.8
2126
Male, age 61, both hemispheres
714.3
2697
Female, age 85, both hemispheres
496.1
2365
Male, age 74, right hemisphere
450.7
2327
Male, age 80, both hemispheres
434.7
2795
Female, age 91, both hemispheres
397.0
2062
Male, age 76, both hemispheres
350.1
Motor trigeminal nucleus nTPM: 531.8
2321
Female, age 91, both hemispheres
638.6
2560
Male, age 74, both hemispheres
592.4
2309
Male, age 76, both hemispheres
496.8
2079
Male, age 80, both hemispheres
480.0
2335
Male, age 61, both hemispheres
450.9
Nuclei of the trapezoid body nTPM: 447.5
2166
Male, age 80, both hemispheres
566.5
2159
Male, age 61, both hemispheres
546.0
2368
Female, age 91, both hemispheres
471.9
1983
Male, age 76, both hemispheres
354.1
2735
Female, age 85, both hemispheres
299.1
Nucleus raphe magnus nTPM: 421.8
2459
Female, age 91, both hemispheres
526.7
2328
Male, age 80, both hemispheres
509.2
2051
Male, age 76, both hemispheres
467.5
2455
Male, age 74, both hemispheres
412.5
2160
Male, age 61, both hemispheres
326.6
2172
Female, age 85, both hemispheres
288.6
Paramedian reticular nucleus nTPM: 433.5
2057
Male, age 80, both hemispheres
519.3
2050
Female, age 85, both hemispheres
409.8
2313
Male, age 61, both hemispheres
405.2
2052
Male, age 76, both hemispheres
399.6
Pedunculopontine tegmental nucleus nTPM: 365.3
2334
Male, age 80, both hemispheres
425.1
1921
Female, age 85, both hemispheres
350.1
2338
Male, age 61, both hemispheres
320.7
Pontine nuclei nTPM: 544.5
2454
Male, age 74, left hemisphere
675.1
2319
Female, age 91, both hemispheres
660.5
2115
Male, age 80, left hemisphere
619.9
1968
Male, age 76, left hemisphere
568.0
2109
Female, age 72, unknown
525.7
1863
Male, age 55, unknown
456.7
2727
Male, age 61, right hemisphere
432.0
2787
Female, age 85, both hemispheres
418.0
Pontine raphe nucleus nTPM: 353.6
2122
Female, age 85, midline
371.6
2853
Male, age 76, midline
335.5
Posteroventral cochlear nucleus nTPM: 536.5
2135
Female, age 91, both hemispheres
725.3
2070
Male, age 76, both hemispheres
577.6
2341
Male, age 80, both hemispheres
573.1
2371
Male, age 61, both hemispheres
449.5
2752
Female, age 85, both hemispheres
356.9
Principal sensory trigeminal nucleus nTPM: 454.3
2367
Female, age 91, left hemisphere
584.8
2324
Male, age 76, both hemispheres
452.8
2008
Male, age 80, left hemisphere
403.1
2158
Male, age 61, both hemispheres
376.3
Reticular pontine nucleus, caudal nTPM: 543.7
2559
Male, age 74, both hemispheres
637.7
2457
Female, age 91, both hemispheres
561.9
2092
Male, age 76, both hemispheres
509.3
2332
Male, age 80, right hemisphere
466.0
Reticular pontine nucleus, oral nTPM: 540.1
2366
Female, age 91, both hemispheres
642.1
2361
Male, age 74, both hemispheres
570.2
2167
Male, age 76, both hemispheres
508.4
1939
Male, age 80, both hemispheres
501.1
2012
Female, age 85, both hemispheres
478.4
Reticulotegmental nucleus nTPM: 452.5
2452
Male, age 74, both hemispheres
526.9
2322
Female, age 91, both hemispheres
487.5
2333
Male, age 80, both hemispheres
472.8
2325
Male, age 76, both hemispheres
322.6
Spinal trigeminal nucleus, oral nTPM: 433.5
2164
Male, age 80, both hemispheres
498.2
1978
Male, age 76, both hemispheres
461.1
2737
Female, age 85, both hemispheres
341.0
Subcoeruleus area nTPM: 469.7
2369
Female, age 85, left hemisphere
665.4
2089
Male, age 76, left hemisphere
525.9
2451
Male, age 74, both hemispheres
420.4
1958
Male, age 80, both hemispheres
383.5
2323
Female, age 91, left hemisphere
353.1
Superior olive nTPM: 497.7
2329
Male, age 80, right hemisphere
584.3
2020
Male, age 76, both hemispheres
545.4
2561
Female, age 91, both hemispheres
508.7
2364
Male, age 74, right hemisphere
472.4
1875
Female, age 85, both hemispheres
377.7
Ventral periolivary nuclei nTPM: 424.6
2023
Male, age 76, both hemispheres
549.3
2165
Male, age 80, both hemispheres
429.6
2794
Female, age 91, left hemisphere
389.2
2130
Female, age 85, both hemispheres
330.0
Ventrolateral tegmental area, A5 NE cell group nTPM: 469.4
2456
Female, age 91, both hemispheres
587.0
2161
Male, age 80, both hemispheres
498.8
1959
Male, age 76, both hemispheres
452.5
2449
Male, age 74, both hemispheres
448.1
2840
Female, age 85, both hemispheres
435.1
2359
Male, age 61, both hemispheres
394.6
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
169.2
Pig sample
Sample description
nTPM
Pons nTPM: 169.2
Samples: 4
Max nTPM: 187.8
Min nTPM: 143.7
Sample A
Female
187.8
Sample B
Female
143.7
Sample C
Male
158.0
Sample D
Male
187.2
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
