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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
494.6
nTPM
FANTOM5:
531.1
Scaled Tags Per Million
Pig:
337.7
nTPM
Allen mouse:
13.7
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
494.6
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 271.5
1984
Male, age 76, both hemispheres
384.5
2301
Female, age 85, both hemispheres
284.1
2090
Male, age 80, both hemispheres
218.3
2188
Female, age 91, both hemispheres
199.1
Dorsal cochlear nucleus nTPM: 320.7
2802
Male, age 74, right hemisphere
429.1
2058
Male, age 76, both hemispheres
334.8
2370
Male, age 61, both hemispheres
316.0
2378
Male, age 80, both hemispheres
271.5
2187
Female, age 91, both hemispheres
252.4
Dorsal tegmental nucleus nTPM: 296.8
2083
Male, age 80, both hemispheres
336.2
1936
Male, age 76, left hemisphere
315.4
2358
Male, age 61, both hemispheres
271.4
2326
Male, age 74, both hemispheres
264.2
Dorsolateral tegmental area nTPM: 272.5
2141
Male, age 76, both hemispheres
388.8
2654
Male, age 80, both hemispheres
301.6
2751
Female, age 85, both hemispheres
268.2
2360
Male, age 74, both hemispheres
236.9
2337
Male, age 61, both hemispheres
167.1
Kolliker-Fuse nucleus nTPM: 313.7
2163
Male, age 80, both hemispheres
383.0
2315
Male, age 76, right hemisphere
306.2
2793
Female, age 91, left hemisphere
251.8
Lateral lemniscal nuclei nTPM: 402.5
2169
Male, age 76, both hemispheres
491.2
2453
Male, age 74, right hemisphere
445.9
2036
Male, age 80, both hemispheres
442.9
2746
Female, age 85, left hemisphere
353.2
2320
Female, age 91, left hemisphere
279.3
Lateral parabrachial nucleus nTPM: 295.0
2139
Female, age 85, right hemisphere
429.1
2790
Male, age 61, both hemispheres
310.6
2013
Male, age 80, both hemispheres
266.8
2792
Male, age 76, both hemispheres
173.3
Lateral vestibular nucleus nTPM: 335.6
2184
Male, age 76, both hemispheres
397.3
2311
Male, age 80, both hemispheres
273.9
Locus coeruleus nTPM: 392.7
2123
Female, age 91, both hemispheres
481.8
2317
Female, age 72, unknown
402.0
1980
Male, age 76, both hemispheres
397.0
2720
Male, age 74, both hemispheres
396.3
2014
Male, age 55, unknown
382.1
2162
Male, age 80, both hemispheres
373.0
2788
Male, age 74, unknown
316.9
Medial parabrachial nucleus nTPM: 296.2
2854
Male, age 80, both hemispheres
336.8
2156
Male, age 61, both hemispheres
310.7
2786
Male, age 76, both hemispheres
307.6
2463
Female, age 85, right hemisphere
270.9
2170
Female, age 91, both hemispheres
254.8
Medial periolivary nuclei nTPM: 409.6
2063
Male, age 76, both hemispheres
587.2
2171
Female, age 85, both hemispheres
550.7
2791
Male, age 74, right hemisphere
360.9
2458
Female, age 91, both hemispheres
277.7
2081
Male, age 80, both hemispheres
271.6
Motor facial nucleus nTPM: 438.2
2062
Male, age 76, both hemispheres
622.3
2327
Male, age 80, both hemispheres
495.0
2795
Female, age 91, both hemispheres
443.4
2697
Female, age 85, both hemispheres
366.5
2365
Male, age 74, right hemisphere
362.4
2126
Male, age 61, both hemispheres
339.7
Motor trigeminal nucleus nTPM: 336.9
2079
Male, age 80, both hemispheres
434.9
2560
Male, age 74, both hemispheres
365.7
2335
Male, age 61, both hemispheres
310.2
2309
Male, age 76, both hemispheres
308.8
2321
Female, age 91, both hemispheres
265.2
Nuclei of the trapezoid body nTPM: 494.6
2735
Female, age 85, both hemispheres
588.9
2159
Male, age 61, both hemispheres
564.8
1983
Male, age 76, both hemispheres
551.8
2166
Male, age 80, both hemispheres
396.0
2368
Female, age 91, both hemispheres
371.5
Nucleus raphe magnus nTPM: 477.5
2160
Male, age 61, both hemispheres
647.6
2172
Female, age 85, both hemispheres
595.4
2328
Male, age 80, both hemispheres
445.5
2455
Male, age 74, both hemispheres
445.2
2051
Male, age 76, both hemispheres
419.5
2459
Female, age 91, both hemispheres
311.9
Paramedian reticular nucleus nTPM: 349.0
2050
Female, age 85, both hemispheres
424.8
2313
Male, age 61, both hemispheres
387.6
2057
Male, age 80, both hemispheres
377.9
2052
Male, age 76, both hemispheres
205.5
Pedunculopontine tegmental nucleus nTPM: 299.0
1921
Female, age 85, both hemispheres
347.6
2334
Male, age 80, both hemispheres
311.7
2338
Male, age 61, both hemispheres
237.8
Pontine nuclei nTPM: 417.5
2787
Female, age 85, both hemispheres
582.3
2727
Male, age 61, right hemisphere
537.7
1968
Male, age 76, left hemisphere
502.7
1863
Male, age 55, unknown
488.4
2109
Female, age 72, unknown
433.3
2115
Male, age 80, left hemisphere
309.6
2454
Male, age 74, left hemisphere
275.7
2319
Female, age 91, both hemispheres
210.2
Pontine raphe nucleus nTPM: 435.2
2122
Female, age 85, midline
463.0
2853
Male, age 76, midline
407.3
Posteroventral cochlear nucleus nTPM: 244.3
2752
Female, age 85, both hemispheres
363.5
2070
Male, age 76, both hemispheres
306.3
2371
Male, age 61, both hemispheres
288.8
2341
Male, age 80, both hemispheres
171.6
2135
Female, age 91, both hemispheres
91.2
Principal sensory trigeminal nucleus nTPM: 414.6
2158
Male, age 61, both hemispheres
612.0
2008
Male, age 80, left hemisphere
445.4
2324
Male, age 76, both hemispheres
369.8
2367
Female, age 91, left hemisphere
231.2
Reticular pontine nucleus, caudal nTPM: 363.5
2332
Male, age 80, right hemisphere
512.2
2092
Male, age 76, both hemispheres
402.7
2457
Female, age 91, both hemispheres
284.5
2559
Male, age 74, both hemispheres
254.7
Reticular pontine nucleus, oral nTPM: 296.9
2012
Female, age 85, both hemispheres
369.9
2361
Male, age 74, both hemispheres
309.9
1939
Male, age 80, both hemispheres
291.9
2167
Male, age 76, both hemispheres
291.3
2366
Female, age 91, both hemispheres
221.5
Reticulotegmental nucleus nTPM: 381.5
2325
Male, age 76, both hemispheres
441.8
2452
Male, age 74, both hemispheres
396.5
2333
Male, age 80, both hemispheres
384.0
2322
Female, age 91, both hemispheres
303.8
Spinal trigeminal nucleus, oral nTPM: 334.1
2164
Male, age 80, both hemispheres
367.0
2737
Female, age 85, both hemispheres
366.1
1978
Male, age 76, both hemispheres
269.3
Subcoeruleus area nTPM: 336.2
2089
Male, age 76, left hemisphere
422.1
2323
Female, age 91, left hemisphere
369.3
1958
Male, age 80, both hemispheres
361.5
2451
Male, age 74, both hemispheres
314.5
2369
Female, age 85, left hemisphere
213.6
Superior olive nTPM: 379.3
1875
Female, age 85, both hemispheres
450.1
2329
Male, age 80, right hemisphere
414.5
2020
Male, age 76, both hemispheres
372.2
2561
Female, age 91, both hemispheres
340.4
2364
Male, age 74, right hemisphere
319.1
Ventral periolivary nuclei nTPM: 439.1
2130
Female, age 85, both hemispheres
576.5
2165
Male, age 80, both hemispheres
507.9
2794
Female, age 91, left hemisphere
345.6
2023
Male, age 76, both hemispheres
326.3
Ventrolateral tegmental area, A5 NE cell group nTPM: 352.8
1959
Male, age 76, both hemispheres
414.2
2449
Male, age 74, both hemispheres
400.2
2161
Male, age 80, both hemispheres
379.6
2840
Female, age 85, both hemispheres
328.1
2456
Female, age 91, both hemispheres
307.0
2359
Male, age 61, both hemispheres
287.8
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
337.7
Pig sample
Sample description
nTPM
Pons nTPM: 337.7
Samples: 4
Max nTPM: 568.6
Min nTPM: 238.6
Sample A
Female
568.6
Sample B
Female
258.6
Sample C
Male
238.6
Sample D
Male
285.0
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
